Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 41408680

GI number: 41408680

Start: 2904445

End: 2906736

Strand: Reverse

Name: yfdE [H]

Synonym: MAP2582c

Alternate gene names: 41408680

Gene position: 2906736-2904445 (Counterclockwise)

Preceding gene: 41408681

Following gene: 41408679

Centisome position: 60.18

GC content: 70.81

Gene sequence:

>2292_bases
GTGACGGCACCCCTTGCGGGGCTGCACGTCGTCGAAATCGCCAGCGAGATCTCGGGTCCCTACGCGACCAAGCTCCTTGT
CGATCTGGGCGCCGAGGTCATCAAGATCGAGCCGCCCGCCGGGGACCCGCTGCGGCGCTGGGGCCCGTTCGCCTCGGGCG
TTGTCGATCCGGACCGGTCGGGCCTGTTCGAGTACATCAACGCCGGCAAACACGCTGCCACGCTTGACTTCTCGGAGACT
GCCGACGTCGCGGCGGCGCGGGAACTCATCGCCCGGGCGCACCTGCTCATTGACGACTCCGGACCCGCAACGCTGCAGGG
ATACGGGCTCGGGCCCGACGACCTGCAGCGGATCAACCCAAACCTGGTGTTGCTGCGCATCTCTGGGTTCGGCCAGACCG
GACCGTTCCGCCGCCGCCCGGCGACACCGCTGACCCTGCAGGCGGCATCGGGCTGGATCAGCTCCCGCGATCCGCAGCGT
CCACCGGTTCAGGTCGGCGCCCGGATCGCCGAGTACGTTGCCGGCGCCTACGGCGCGCTGGGCGCACTGACCGCCCTGCG
TTCACACCCCGCCGGGCACGTCACCGAAGTCGATGTCTCCCAGCTGGAATCGTTGCTGTCCACGTTGCCGTATCCGATGT
TGATGGCCCAGCGGATGCGACGGCTCGGGCTGCCCGCCAACCTGCGGTCGGCGCCCATGCTGGGCGTGGTGCGGGCCGCC
GACGGCTGGGTCGGCATCAACTGCCTGACGGGCCAGCACTGGCTCGACGTCTGCGCGATGCTCGGCCTGCCCGAGTTCGG
CGAGCACCAGCTCGCGATCATGCTGGGCGGCCCAGAGCGCGCCGACTTCTTCGCCAAAGCTGAGCCGGTACTTGCCGGCC
AGACCGTCGCCGAGATCGTGGAACTCGCTCAGGCGCTGCGGATTCCGGCCGCGCCCGTCAACGACGGCGCCACTGTGCTC
GATTGCCCGCAATACGCCGAGCGGGGGTTCTTCGTCGACACCGGGTCGTTTCGGCGGCCCGGGCCGCCATTCCGGTTCTC
GAAAACCCCTGTGCCGCAGCCACGTCCGGCGCCACTGTCTGGGGCGTCGCGAACGACGTGGACCGGTGACGGCCGAGCGC
TGCACCGAGCGCCCGGGCCGCTGCCCTTCGCCGGGCTGCGGGTGCTCGACCTCACCACGTACTGGGCCGGTGCCTACCTG
ACCTGCTACCTCGGGGCGTTCGGCGCCGACATCGTCAAGGTCGAGTCGATCCAGCGCCCCGACGGGCACCGCTATTCGGG
GGCGTTCGCCTACGAGGGCGACGACTGGTACGAGCGCAGCCCCATCTGGCAGGGCACCAACCTCAACAAACGCGACCTCA
CGCTGGACCTGACGTCGCCGCGGGGCCTCGACCTGGCGCGGCGGCTGGCCGCCCGGGCCGACATCGTGGTGGAGAACTTT
TCGCCGCGCGTCGTCGAGAACTTCGGGCTGGACTACGACTCGCTGACGGCGCTGAACCCCGACGTGATCGTGGTACGGAT
GCCCGGCTACGGCCTGCACGGCCCGTGGCGCGACTACGTCGGCTGGGCGCTGAACTTCGAGCAGACCGCCGGAATGTCGG
CCGTCACCGGCTTTCCCGACGGCCCGCCGTGCAACCCCCAGGGCCCGGCCGATCCGATCGTCGGCGTGCACGCCGGGGTC
GCGCTGCTGGCCGCGCTCGAGCACCGCAACCGCACCGGCGCCGGCCAACTCGTCGAGGTGGCCCAGATCGAGGTCGCCGC
CGCGGTCACCGCCACACCGGTCATCGAGTACTCGATGACCGGTGTGGTGCGGCCTCGGGAGGGCAACCGCCGGCGCGGCT
GCCTGCAGGGCGTCTACCCGACCAACGAGGAAGAAGTGTGGGTGGCGCTGTCGGTGCCCGGTCGGCCGATCGACCACGAC
GCCTTCGACGAGCTCGTCGCCGCCTGGACCCGCACGCAGACCGCCGCGGCGATCGTCGAAACCCTTCAGGCACAAGGGAT
CGCGGCCGAGCGGGTGATCACCGGCGACCAGATGTACGATCCCGAGCTGATCGGGGCCCAGCTGGACGTGCGTGGCTACT
ACGAGGAGCTCGAGCACCGGATCACCGGGCCGCACCGCTACCCCGGGTGGCCCTTTCGCATCGCGCCCGGCCCGCGGCGG
CACCACCGCACCGCCCCGCCGACGCTCGGCCAGCACAACGACGAGGTGCTGCGCGAGCTGGGCCTGTCCGAGGCGGAGAT
AGCGGACCTGCGTCAGCAGCGGGTCATCGGCGAGCGGGTGCTCAACGCATAG

Upstream 100 bases:

>100_bases
CGCCGTTCGGCGGCTTCAGGCTCAGCGGGCTGGGCCGCGAGGGCGGCGGAATCGGCGGGCTGCACCAGTACATGGAGCCG
ATGGCCATCGGGGTCCCCGC

Downstream 100 bases:

>100_bases
CTGCCGGCAACGCATGCCGGGCCCTTTGTAAACCGCGCGTGACATGCCAAGCTGCTCGACATGGCCATCGAGATCGCCCG
CCCCAAACTCGAGGGAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 762

Protein sequence:

>763_residues
MTAPLAGLHVVEIASEISGPYATKLLVDLGAEVIKIEPPAGDPLRRWGPFASGVVDPDRSGLFEYINAGKHAATLDFSET
ADVAAARELIARAHLLIDDSGPATLQGYGLGPDDLQRINPNLVLLRISGFGQTGPFRRRPATPLTLQAASGWISSRDPQR
PPVQVGARIAEYVAGAYGALGALTALRSHPAGHVTEVDVSQLESLLSTLPYPMLMAQRMRRLGLPANLRSAPMLGVVRAA
DGWVGINCLTGQHWLDVCAMLGLPEFGEHQLAIMLGGPERADFFAKAEPVLAGQTVAEIVELAQALRIPAAPVNDGATVL
DCPQYAERGFFVDTGSFRRPGPPFRFSKTPVPQPRPAPLSGASRTTWTGDGRALHRAPGPLPFAGLRVLDLTTYWAGAYL
TCYLGAFGADIVKVESIQRPDGHRYSGAFAYEGDDWYERSPIWQGTNLNKRDLTLDLTSPRGLDLARRLAARADIVVENF
SPRVVENFGLDYDSLTALNPDVIVVRMPGYGLHGPWRDYVGWALNFEQTAGMSAVTGFPDGPPCNPQGPADPIVGVHAGV
ALLAALEHRNRTGAGQLVEVAQIEVAAAVTATPVIEYSMTGVVRPREGNRRRGCLQGVYPTNEEEVWVALSVPGRPIDHD
AFDELVAAWTRTQTAAAIVETLQAQGIAAERVITGDQMYDPELIGAQLDVRGYYEELEHRITGPHRYPGWPFRIAPGPRR
HHRTAPPTLGQHNDEVLRELGLSEAEIADLRQQRVIGERVLNA

Sequences:

>Translated_763_residues
MTAPLAGLHVVEIASEISGPYATKLLVDLGAEVIKIEPPAGDPLRRWGPFASGVVDPDRSGLFEYINAGKHAATLDFSET
ADVAAARELIARAHLLIDDSGPATLQGYGLGPDDLQRINPNLVLLRISGFGQTGPFRRRPATPLTLQAASGWISSRDPQR
PPVQVGARIAEYVAGAYGALGALTALRSHPAGHVTEVDVSQLESLLSTLPYPMLMAQRMRRLGLPANLRSAPMLGVVRAA
DGWVGINCLTGQHWLDVCAMLGLPEFGEHQLAIMLGGPERADFFAKAEPVLAGQTVAEIVELAQALRIPAAPVNDGATVL
DCPQYAERGFFVDTGSFRRPGPPFRFSKTPVPQPRPAPLSGASRTTWTGDGRALHRAPGPLPFAGLRVLDLTTYWAGAYL
TCYLGAFGADIVKVESIQRPDGHRYSGAFAYEGDDWYERSPIWQGTNLNKRDLTLDLTSPRGLDLARRLAARADIVVENF
SPRVVENFGLDYDSLTALNPDVIVVRMPGYGLHGPWRDYVGWALNFEQTAGMSAVTGFPDGPPCNPQGPADPIVGVHAGV
ALLAALEHRNRTGAGQLVEVAQIEVAAAVTATPVIEYSMTGVVRPREGNRRRGCLQGVYPTNEEEVWVALSVPGRPIDHD
AFDELVAAWTRTQTAAAIVETLQAQGIAAERVITGDQMYDPELIGAQLDVRGYYEELEHRITGPHRYPGWPFRIAPGPRR
HHRTAPPTLGQHNDEVLRELGLSEAEIADLRQQRVIGERVLNA
>Mature_762_residues
TAPLAGLHVVEIASEISGPYATKLLVDLGAEVIKIEPPAGDPLRRWGPFASGVVDPDRSGLFEYINAGKHAATLDFSETA
DVAAARELIARAHLLIDDSGPATLQGYGLGPDDLQRINPNLVLLRISGFGQTGPFRRRPATPLTLQAASGWISSRDPQRP
PVQVGARIAEYVAGAYGALGALTALRSHPAGHVTEVDVSQLESLLSTLPYPMLMAQRMRRLGLPANLRSAPMLGVVRAAD
GWVGINCLTGQHWLDVCAMLGLPEFGEHQLAIMLGGPERADFFAKAEPVLAGQTVAEIVELAQALRIPAAPVNDGATVLD
CPQYAERGFFVDTGSFRRPGPPFRFSKTPVPQPRPAPLSGASRTTWTGDGRALHRAPGPLPFAGLRVLDLTTYWAGAYLT
CYLGAFGADIVKVESIQRPDGHRYSGAFAYEGDDWYERSPIWQGTNLNKRDLTLDLTSPRGLDLARRLAARADIVVENFS
PRVVENFGLDYDSLTALNPDVIVVRMPGYGLHGPWRDYVGWALNFEQTAGMSAVTGFPDGPPCNPQGPADPIVGVHAGVA
LLAALEHRNRTGAGQLVEVAQIEVAAAVTATPVIEYSMTGVVRPREGNRRRGCLQGVYPTNEEEVWVALSVPGRPIDHDA
FDELVAAWTRTQTAAAIVETLQAQGIAAERVITGDQMYDPELIGAQLDVRGYYEELEHRITGPHRYPGWPFRIAPGPRRH
HRTAPPTLGQHNDEVLRELGLSEAEIADLRQQRVIGERVLNA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=398, Percent_Identity=27.6381909547739, Blast_Score=140, Evalue=5e-33,
Organism=Homo sapiens, GI300863124, Length=424, Percent_Identity=26.6509433962264, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=25.5102040816327, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI13376042, Length=402, Percent_Identity=23.6318407960199, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=23.7163814180929, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=23.8805970149254, Blast_Score=87, Evalue=7e-17,
Organism=Homo sapiens, GI266458397, Length=216, Percent_Identity=28.7037037037037, Blast_Score=81, Evalue=4e-15,
Organism=Homo sapiens, GI266458393, Length=216, Percent_Identity=28.7037037037037, Blast_Score=80, Evalue=6e-15,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=31.2925170068027, Blast_Score=73, Evalue=9e-13,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=31.2925170068027, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87082093, Length=369, Percent_Identity=28.9972899728997, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI1788717, Length=201, Percent_Identity=31.3432835820896, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1786222, Length=344, Percent_Identity=28.4883720930233, Blast_Score=80, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=207, Percent_Identity=29.951690821256, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=214, Percent_Identity=27.5700934579439, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=201, Percent_Identity=36.81592039801, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24585488, Length=213, Percent_Identity=26.2910798122066, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 82493; Mature: 82361

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPLAGLHVVEIASEISGPYATKLLVDLGAEVIKIEPPAGDPLRRWGPFASGVVDPDRS
CCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCCCCCCHH
GLFEYINAGKHAATLDFSETADVAAARELIARAHLLIDDSGPATLQGYGLGPDDLQRINP
HHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCHHHHHHCCC
NLVLLRISGFGQTGPFRRRPATPLTLQAASGWISSRDPQRPPVQVGARIAEYVAGAYGAL
CEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GALTALRSHPAGHVTEVDVSQLESLLSTLPYPMLMAQRMRRLGLPANLRSAPMLGVVRAA
HHHHHHHCCCCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
DGWVGINCLTGQHWLDVCAMLGLPEFGEHQLAIMLGGPERADFFAKAEPVLAGQTVAEIV
CCEEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCHHHHHHHH
ELAQALRIPAAPVNDGATVLDCPQYAERGFFVDTGSFRRPGPPFRFSKTPVPQPRPAPLS
HHHHHHCCCCCCCCCCCEEEECHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
GASRTTWTGDGRALHRAPGPLPFAGLRVLDLTTYWAGAYLTCYLGAFGADIVKVESIQRP
CCCCCEECCCCCEEECCCCCCCHHCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
DGHRYSGAFAYEGDDWYERSPIWQGTNLNKRDLTLDLTSPRGLDLARRLAARADIVVENF
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCEEEECC
SPRVVENFGLDYDSLTALNPDVIVVRMPGYGLHGPWRDYVGWALNFEQTAGMSAVTGFPD
CCHHHHHCCCCHHHEEECCCCEEEEECCCCCCCCCHHHHHCEEECHHHHCCCCEECCCCC
GPPCNPQGPADPIVGVHAGVALLAALEHRNRTGAGQLVEVAQIEVAAAVTATPVIEYSMT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECC
GVVRPREGNRRRGCLQGVYPTNEEEVWVALSVPGRPIDHDAFDELVAAWTRTQTAAAIVE
EEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLQAQGIAAERVITGDQMYDPELIGAQLDVRGYYEELEHRITGPHRYPGWPFRIAPGPRR
HHHHCCCCHHEEECCCCCCCHHHHCCEEEHHHHHHHHHHHCCCCCCCCCCCEEECCCCCC
HHRTAPPTLGQHNDEVLRELGLSEAEIADLRQQRVIGERVLNA
CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAPLAGLHVVEIASEISGPYATKLLVDLGAEVIKIEPPAGDPLRRWGPFASGVVDPDRS
CCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCCCCCCHH
GLFEYINAGKHAATLDFSETADVAAARELIARAHLLIDDSGPATLQGYGLGPDDLQRINP
HHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCHHHHHHCCC
NLVLLRISGFGQTGPFRRRPATPLTLQAASGWISSRDPQRPPVQVGARIAEYVAGAYGAL
CEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GALTALRSHPAGHVTEVDVSQLESLLSTLPYPMLMAQRMRRLGLPANLRSAPMLGVVRAA
HHHHHHHCCCCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
DGWVGINCLTGQHWLDVCAMLGLPEFGEHQLAIMLGGPERADFFAKAEPVLAGQTVAEIV
CCEEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCHHHHHHHH
ELAQALRIPAAPVNDGATVLDCPQYAERGFFVDTGSFRRPGPPFRFSKTPVPQPRPAPLS
HHHHHHCCCCCCCCCCCEEEECHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
GASRTTWTGDGRALHRAPGPLPFAGLRVLDLTTYWAGAYLTCYLGAFGADIVKVESIQRP
CCCCCEECCCCCEEECCCCCCCHHCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
DGHRYSGAFAYEGDDWYERSPIWQGTNLNKRDLTLDLTSPRGLDLARRLAARADIVVENF
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCEEEECC
SPRVVENFGLDYDSLTALNPDVIVVRMPGYGLHGPWRDYVGWALNFEQTAGMSAVTGFPD
CCHHHHHCCCCHHHEEECCCCEEEEECCCCCCCCCHHHHHCEEECHHHHCCCCEECCCCC
GPPCNPQGPADPIVGVHAGVALLAALEHRNRTGAGQLVEVAQIEVAAAVTATPVIEYSMT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECC
GVVRPREGNRRRGCLQGVYPTNEEEVWVALSVPGRPIDHDAFDELVAAWTRTQTAAAIVE
EEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLQAQGIAAERVITGDQMYDPELIGAQLDVRGYYEELEHRITGPHRYPGWPFRIAPGPRR
HHHHCCCCHHEEECCCCCCCHHHHCCEEEHHHHHHHHHHHCCCCCCCCCCCEEECCCCCC
HHRTAPPTLGQHNDEVLRELGLSEAEIADLRQQRVIGERVLNA
CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]