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The map label for this gene is ycdM [C]

Identifier: 41408579

GI number: 41408579

Start: 2785070

End: 2786044

Strand: Reverse

Name: ycdM [C]

Synonym: MAP2481c

Alternate gene names: 41408579

Gene position: 2786044-2785070 (Counterclockwise)

Preceding gene: 41408581

Following gene: 41408578

Centisome position: 57.68

GC content: 70.87

Gene sequence:

>975_bases
ATGCGCGATGGAGGTGTTGGTCAGACCCATTCGCCCCATGGTTCCACTGAAGGGCCGAATGTTAAACATGCCAGAATCCC
CGTCGTGCGGGTAGCGATGACCATGCCGGTGATGGAGCCGGATCTGGACGCGACGGTGCTCGAGACCTGGGCGCGCACCA
TCGACGAGGGCCCGTTCTCGTCGCTGTGCTGGGGCGAGCGCATCGCCTTCGACAACCCGGACAGCCTCACACTGCTGGGG
GCGTTGGCCGCCTGGACCGAGCGGGTCCGGCTGCTGACCACCCTGATCGTGCCGCAACTGCACGACCCGGTGCTGCTCGC
CAAGGGACTGGCGACCGGCGACCTGCTCAGCGGAGGGCGGCTGAGCGTGGGCATCGGCGTGGGCGGTCGGCAGGAGGACT
ACCACGCCGTCGGCGCCGACCCCGCGACCCAGACGATGCGCGGCATGGCCGAGCGGGTGGCGGTGATGAAGCGGGTGTGG
GCGGGCGAGAAGCTCACCGAATCCGTGTTGCCGGTCGGGCCGGCGCCGGTGCAGCCCGGCGGACCGCCGCTGTTCGTCGG
CAGCATCGGACCCAAGACCATTCGCAGCGCGGCCGCCTGGGCCGACGGGCTGGCCGGCACCACGCTGGACCTCGACGTTG
CCAAGCAGCGCGAGCTGTTCGACGTGACCCGAGACGCCTGGGCGCGGGCCGGCAAGCCCGCGCCCCACCTGATCACCTCG
TTCTGGTTCGCGTTCGGCTCGCCCCGGACCGCCCGCGAGCAGATCCACCGCCACCTGCGGCGCTACATGAACTGGATACC
GGCCGACTACGGCGACGCCATGGCGCCGACGACGGGCTGGGCCGGTGACGAGGACGAGCTGGCAGAGGTGCTGCGCAAAT
TCGCCGAGATCGGGGCCGACGAGGTGCAGCTGATCCCGACCAGCTCGGACGTCGGCCAGCTGCGCCGTGCGGCCGACGTC
GCCGCCCGGCTGTAG

Upstream 100 bases:

>100_bases
ACGCGTCGGCGTTGTCGGGCACCTCCAGCAGCACCGGCCAACCGAACACGCTCTCGTAGAACCGCCGTGACCGCTCGATG
TCGGTCACGGTCAGGCGCAC

Downstream 100 bases:

>100_bases
CCGGGTCCGGGCGCGTCGGGGTGAATTGCCGGGCCGGCGCGGCGGCGATTTGATTGGTGGCATGACGCAGCAGGAATTGC
CCGCCCCGCTGGCCGAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MRDGGVGQTHSPHGSTEGPNVKHARIPVVRVAMTMPVMEPDLDATVLETWARTIDEGPFSSLCWGERIAFDNPDSLTLLG
ALAAWTERVRLLTTLIVPQLHDPVLLAKGLATGDLLSGGRLSVGIGVGGRQEDYHAVGADPATQTMRGMAERVAVMKRVW
AGEKLTESVLPVGPAPVQPGGPPLFVGSIGPKTIRSAAAWADGLAGTTLDLDVAKQRELFDVTRDAWARAGKPAPHLITS
FWFAFGSPRTAREQIHRHLRRYMNWIPADYGDAMAPTTGWAGDEDELAEVLRKFAEIGADEVQLIPTSSDVGQLRRAADV
AARL

Sequences:

>Translated_324_residues
MRDGGVGQTHSPHGSTEGPNVKHARIPVVRVAMTMPVMEPDLDATVLETWARTIDEGPFSSLCWGERIAFDNPDSLTLLG
ALAAWTERVRLLTTLIVPQLHDPVLLAKGLATGDLLSGGRLSVGIGVGGRQEDYHAVGADPATQTMRGMAERVAVMKRVW
AGEKLTESVLPVGPAPVQPGGPPLFVGSIGPKTIRSAAAWADGLAGTTLDLDVAKQRELFDVTRDAWARAGKPAPHLITS
FWFAFGSPRTAREQIHRHLRRYMNWIPADYGDAMAPTTGWAGDEDELAEVLRKFAEIGADEVQLIPTSSDVGQLRRAADV
AARL
>Mature_324_residues
MRDGGVGQTHSPHGSTEGPNVKHARIPVVRVAMTMPVMEPDLDATVLETWARTIDEGPFSSLCWGERIAFDNPDSLTLLG
ALAAWTERVRLLTTLIVPQLHDPVLLAKGLATGDLLSGGRLSVGIGVGGRQEDYHAVGADPATQTMRGMAERVAVMKRVW
AGEKLTESVLPVGPAPVQPGGPPLFVGSIGPKTIRSAAAWADGLAGTTLDLDVAKQRELFDVTRDAWARAGKPAPHLITS
FWFAFGSPRTAREQIHRHLRRYMNWIPADYGDAMAPTTGWAGDEDELAEVLRKFAEIGADEVQLIPTSSDVGQLRRAADV
AARL

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 34842; Mature: 34842

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDGGVGQTHSPHGSTEGPNVKHARIPVVRVAMTMPVMEPDLDATVLETWARTIDEGPFS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
SLCWGERIAFDNPDSLTLLGALAAWTERVRLLTTLIVPQLHDPVLLAKGLATGDLLSGGR
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC
LSVGIGVGGRQEDYHAVGADPATQTMRGMAERVAVMKRVWAGEKLTESVLPVGPAPVQPG
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
GPPLFVGSIGPKTIRSAAAWADGLAGTTLDLDVAKQRELFDVTRDAWARAGKPAPHLITS
CCEEEEECCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
FWFAFGSPRTAREQIHRHLRRYMNWIPADYGDAMAPTTGWAGDEDELAEVLRKFAEIGAD
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
EVQLIPTSSDVGQLRRAADVAARL
CEEEEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDGGVGQTHSPHGSTEGPNVKHARIPVVRVAMTMPVMEPDLDATVLETWARTIDEGPFS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
SLCWGERIAFDNPDSLTLLGALAAWTERVRLLTTLIVPQLHDPVLLAKGLATGDLLSGGR
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC
LSVGIGVGGRQEDYHAVGADPATQTMRGMAERVAVMKRVWAGEKLTESVLPVGPAPVQPG
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
GPPLFVGSIGPKTIRSAAAWADGLAGTTLDLDVAKQRELFDVTRDAWARAGKPAPHLITS
CCEEEEECCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
FWFAFGSPRTAREQIHRHLRRYMNWIPADYGDAMAPTTGWAGDEDELAEVLRKFAEIGAD
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
EVQLIPTSSDVGQLRRAADVAARL
CEEEEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]