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The map label for this gene is yfdE [H]

Identifier: 41408504

GI number: 41408504

Start: 2702104

End: 2703303

Strand: Reverse

Name: yfdE [H]

Synonym: MAP2406c

Alternate gene names: 41408504

Gene position: 2703303-2702104 (Counterclockwise)

Preceding gene: 41408505

Following gene: 41408503

Centisome position: 55.97

GC content: 70.75

Gene sequence:

>1200_bases
ATGACCGATCCGCGGCTGCCCCTGCACGGCCTCAGTGTGGTGGAGGTGTCCAGCTTCGTCGCCGCGCCGTTGTGCGGCAT
GACGCTGAGTCAGCTCGGCGCGGAGGTGATCCGGGTCGACCCGATCGGCGGCGCTTCCGACGTGCAACGCTGGCCGCTGG
CGGCGGACGGCACGTCGATCTATTGGACCGGGCTGAACAAGGGAAAGCGTTCGGCCACCATCGATTTGCGGTCCGCCGAG
GGCCAACGGCTGGTGCAGCGACTGATCGTGGAGGGCGACGGCGTCGTCGTCACCAACGCGGCGGGCCTGTCCTGGCTGAG
CCACGATGCGCTGGCGGCGCTGCGCGCCGACGTCATCCACGTCCAGCTACTCGGTCGCGGCGACGGCTCCACCGGTGTGG
ACTACACCGTCAACGCCGGCATCGGCTACCCGCTGGTCACCGGCCCGGCCGAGCACGCCGGCCCGATCAACCACGTGCTG
CCGGCCTGGGACGTGTGCTGCGGACTGTATGCCGCGCTGTCCGTCGTCACCGCCGTCCACCGCCGCGAGCAGTCCGGGGC
CGGCGCGCGGATCAGCCTGGCGCTGGAGGACGTCGCGCTGGCCACCGCGGCCAACCTGGGGTTGCTCACCGAGCCGCAAG
TCGTCGGCACCCAGCGCGAACGGTTGGGCAACGCCATCTACGGCCAGTACGGGCAGGACTTCACCAGCCGCGACGGAGCC
AGGTTCATGGTTGTCACGTTGACCGGTCGGCATTTTCGCGACCTGCTCGACGTGACGGGCACCGGCGCGGCGGTGTCGGC
GCTCGCCGATGCGCTGGGTGTCGACTTCGGCTCCGAGGGCGAGCGCTACCGGTACCGCGACGTGCTCTCCGGTCTGTTCG
CCACCTGGTTCGGCGATCACACCGCCGACGAAATCACCGCCGCGCTGTCGCACACCACCGTGCTCTTCGAGCGGTACCGC
ACCTTCGCCGAGGTCGCGGCGGGGCCGAAAGTCACTGCCAATCCGCTGTTTTCCCGATTGCACCAACCCGGCCTGGGTGA
CTACTTCGCGCCCGGATTGCCGGCCGCGTTCGACGGCACCCATCCCGCCGGCGCGCCCGCCCCCGCCCTGGGGCAAGACA
CCGCCGAGGTCCTCGCGCGGCTGGGGCTCACCGCCGCGGACATCGAGCGGCTGGCCGACGCCAAGACCATCGCCTGCTGA

Upstream 100 bases:

>100_bases
GCACGCGAGCTCACCCGCCGCCAGGCCCGCTACGGCCTGGAGACGATGTGCATCGGCGGCGGCCAGGGCCTGGCCGCCGC
CTTCGAGCGGGTCGCCTGAG

Downstream 100 bases:

>100_bases
GCAACCGAAGGGAACGCAGCACATGACCAGACTGGCCCAAACCCTCGGGTTGACCGAATTCCAGACCGAGATCATCGCCA
CCGTACGGCAATTCGTCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTDPRLPLHGLSVVEVSSFVAAPLCGMTLSQLGAEVIRVDPIGGASDVQRWPLAADGTSIYWTGLNKGKRSATIDLRSAE
GQRLVQRLIVEGDGVVVTNAAGLSWLSHDALAALRADVIHVQLLGRGDGSTGVDYTVNAGIGYPLVTGPAEHAGPINHVL
PAWDVCCGLYAALSVVTAVHRREQSGAGARISLALEDVALATAANLGLLTEPQVVGTQRERLGNAIYGQYGQDFTSRDGA
RFMVVTLTGRHFRDLLDVTGTGAAVSALADALGVDFGSEGERYRYRDVLSGLFATWFGDHTADEITAALSHTTVLFERYR
TFAEVAAGPKVTANPLFSRLHQPGLGDYFAPGLPAAFDGTHPAGAPAPALGQDTAEVLARLGLTAADIERLADAKTIAC

Sequences:

>Translated_399_residues
MTDPRLPLHGLSVVEVSSFVAAPLCGMTLSQLGAEVIRVDPIGGASDVQRWPLAADGTSIYWTGLNKGKRSATIDLRSAE
GQRLVQRLIVEGDGVVVTNAAGLSWLSHDALAALRADVIHVQLLGRGDGSTGVDYTVNAGIGYPLVTGPAEHAGPINHVL
PAWDVCCGLYAALSVVTAVHRREQSGAGARISLALEDVALATAANLGLLTEPQVVGTQRERLGNAIYGQYGQDFTSRDGA
RFMVVTLTGRHFRDLLDVTGTGAAVSALADALGVDFGSEGERYRYRDVLSGLFATWFGDHTADEITAALSHTTVLFERYR
TFAEVAAGPKVTANPLFSRLHQPGLGDYFAPGLPAAFDGTHPAGAPAPALGQDTAEVLARLGLTAADIERLADAKTIAC
>Mature_398_residues
TDPRLPLHGLSVVEVSSFVAAPLCGMTLSQLGAEVIRVDPIGGASDVQRWPLAADGTSIYWTGLNKGKRSATIDLRSAEG
QRLVQRLIVEGDGVVVTNAAGLSWLSHDALAALRADVIHVQLLGRGDGSTGVDYTVNAGIGYPLVTGPAEHAGPINHVLP
AWDVCCGLYAALSVVTAVHRREQSGAGARISLALEDVALATAANLGLLTEPQVVGTQRERLGNAIYGQYGQDFTSRDGAR
FMVVTLTGRHFRDLLDVTGTGAAVSALADALGVDFGSEGERYRYRDVLSGLFATWFGDHTADEITAALSHTTVLFERYRT
FAEVAAGPKVTANPLFSRLHQPGLGDYFAPGLPAAFDGTHPAGAPAPALGQDTAEVLARLGLTAADIERLADAKTIAC

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=23.2142857142857, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI42794625, Length=413, Percent_Identity=25.181598062954, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI266456254, Length=413, Percent_Identity=25.181598062954, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI300863124, Length=418, Percent_Identity=22.488038277512, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082093, Length=232, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788717, Length=438, Percent_Identity=21.9178082191781, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=393, Percent_Identity=25.6997455470738, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41817; Mature: 41685

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPRLPLHGLSVVEVSSFVAAPLCGMTLSQLGAEVIRVDPIGGASDVQRWPLAADGTSI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCEE
YWTGLNKGKRSATIDLRSAEGQRLVQRLIVEGDGVVVTNAAGLSWLSHDALAALRADVIH
EEECCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCEEE
VQLLGRGDGSTGVDYTVNAGIGYPLVTGPAEHAGPINHVLPAWDVCCGLYAALSVVTAVH
EEEEECCCCCCCCCEEEECCCCCCEECCCHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHH
RREQSGAGARISLALEDVALATAANLGLLTEPQVVGTQRERLGNAIYGQYGQDFTSRDGA
HHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCHHHCCHHHHHCCHHHCCCCCCCCCCCCC
RFMVVTLTGRHFRDLLDVTGTGAAVSALADALGVDFGSEGERYRYRDVLSGLFATWFGDH
EEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
TADEITAALSHTTVLFERYRTFAEVAAGPKVTANPLFSRLHQPGLGDYFAPGLPAAFDGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
HPAGAPAPALGQDTAEVLARLGLTAADIERLADAKTIAC
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCHHHCCC
>Mature Secondary Structure 
TDPRLPLHGLSVVEVSSFVAAPLCGMTLSQLGAEVIRVDPIGGASDVQRWPLAADGTSI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCEE
YWTGLNKGKRSATIDLRSAEGQRLVQRLIVEGDGVVVTNAAGLSWLSHDALAALRADVIH
EEECCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCEEE
VQLLGRGDGSTGVDYTVNAGIGYPLVTGPAEHAGPINHVLPAWDVCCGLYAALSVVTAVH
EEEEECCCCCCCCCEEEECCCCCCEECCCHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHH
RREQSGAGARISLALEDVALATAANLGLLTEPQVVGTQRERLGNAIYGQYGQDFTSRDGA
HHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCHHHCCHHHHHCCHHHCCCCCCCCCCCCC
RFMVVTLTGRHFRDLLDVTGTGAAVSALADALGVDFGSEGERYRYRDVLSGLFATWFGDH
EEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
TADEITAALSHTTVLFERYRTFAEVAAGPKVTANPLFSRLHQPGLGDYFAPGLPAAFDGT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
HPAGAPAPALGQDTAEVLARLGLTAADIERLADAKTIAC
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]