Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 41408502

GI number: 41408502

Start: 2700189

End: 2700881

Strand: Reverse

Name: ydhC [H]

Synonym: MAP2404c

Alternate gene names: 41408502

Gene position: 2700881-2700189 (Counterclockwise)

Preceding gene: 41408503

Following gene: 41408501

Centisome position: 55.92

GC content: 68.54

Gene sequence:

>693_bases
ATGAGCGTTCCGGATTTCGCGGCCCGACCGCAACTTTCCGACGACGTCGCGCATCTGATCCGCGGCCGGATCTTCGACGG
CAGTTACGCCGCCGGCTCCTATGTGCGGCTGGATCAGCTGGCCGCCGAACTCGGGATCAGCGTCACACCGGTGCGTGAAG
CGCTGTTCGCGCTGCGCGCCGAGGGCCTGATCAGCCAGCAGCCCCGGCGCGGCTTCGTGGTGCTGCCGGTCACCCGGCGC
GACGTCACCGACGTGGCGAACGTGCAGGCGCACGTCGGCGGTGAGCTGGCCGCGCGTGCGGCGGTCAACATCACCGACGA
CCAGCTGCGCGAGCTCAAACAGATCCAGGCGCAGCTGGAGGACGCCTACGCCGGCGACGAGCACGAGCGCACCGTCCGGC
TGAACCACGAATTCCACCGGGCCATCAACATCGCCGCCGACTCACCCAAACTGGCGCAGCTGATGTCCCAAATCACCCGC
TACGCACCGGAATCGGTGTTCCCTGCGATCGAGGGCTGGCCCGAGCAGTCGATGAAGGACCACCGGCGCATCTTGTCCGC
GCTGAAAAAGCGGGACGACAAGCTGGCCCGTGCGGCGATGTCGGAGCACCTGGCCGCCGGTGCGGTTCCGTTGATCGACC
ATCTGGTCGCCCGCGGTGTGGTGGTCGACGCCGGCGGGCCGGACCCCGGTTGA

Upstream 100 bases:

>100_bases
GCGCGACGCGCCGTTTTTGCTCATCGGCGAGGGCACCAGCGAGATCCAGAAGAACATCATCAGTAAGCGGCTGCTCGCCG
AATACCGGGTGTAGGCAACG

Downstream 100 bases:

>100_bases
CGCCAGGCCTGTTGTCTTTGTGGACGGGTGCGGCATACGCTGCGACCTAAGGGGGCAACAGAACGGAGCGAGGAAGGATG
TTCCCGACGCTTCGCGCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSVPDFAARPQLSDDVAHLIRGRIFDGSYAAGSYVRLDQLAAELGISVTPVREALFALRAEGLISQQPRRGFVVLPVTRR
DVTDVANVQAHVGGELAARAAVNITDDQLRELKQIQAQLEDAYAGDEHERTVRLNHEFHRAINIAADSPKLAQLMSQITR
YAPESVFPAIEGWPEQSMKDHRRILSALKKRDDKLARAAMSEHLAAGAVPLIDHLVARGVVVDAGGPDPG

Sequences:

>Translated_230_residues
MSVPDFAARPQLSDDVAHLIRGRIFDGSYAAGSYVRLDQLAAELGISVTPVREALFALRAEGLISQQPRRGFVVLPVTRR
DVTDVANVQAHVGGELAARAAVNITDDQLRELKQIQAQLEDAYAGDEHERTVRLNHEFHRAINIAADSPKLAQLMSQITR
YAPESVFPAIEGWPEQSMKDHRRILSALKKRDDKLARAAMSEHLAAGAVPLIDHLVARGVVVDAGGPDPG
>Mature_229_residues
SVPDFAARPQLSDDVAHLIRGRIFDGSYAAGSYVRLDQLAAELGISVTPVREALFALRAEGLISQQPRRGFVVLPVTRRD
VTDVANVQAHVGGELAARAAVNITDDQLRELKQIQAQLEDAYAGDEHERTVRLNHEFHRAINIAADSPKLAQLMSQITRY
APESVFPAIEGWPEQSMKDHRRILSALKKRDDKLARAAMSEHLAAGAVPLIDHLVARGVVVDAGGPDPG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=199, Percent_Identity=26.1306532663317, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787821, Length=200, Percent_Identity=26, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25075; Mature: 24944

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPDFAARPQLSDDVAHLIRGRIFDGSYAAGSYVRLDQLAAELGISVTPVREALFALRA
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGLISQQPRRGFVVLPVTRRDVTDVANVQAHVGGELAARAAVNITDDQLRELKQIQAQLE
HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHH
DAYAGDEHERTVRLNHEFHRAINIAADSPKLAQLMSQITRYAPESVFPAIEGWPEQSMKD
HHHCCCCCCCEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCHHHCCCCHHHHHH
HRRILSALKKRDDKLARAAMSEHLAAGAVPLIDHLVARGVVVDAGGPDPG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCC
>Mature Secondary Structure 
SVPDFAARPQLSDDVAHLIRGRIFDGSYAAGSYVRLDQLAAELGISVTPVREALFALRA
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGLISQQPRRGFVVLPVTRRDVTDVANVQAHVGGELAARAAVNITDDQLRELKQIQAQLE
HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHH
DAYAGDEHERTVRLNHEFHRAINIAADSPKLAQLMSQITRYAPESVFPAIEGWPEQSMKD
HHHCCCCCCCEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCHHHCCCCHHHHHH
HRRILSALKKRDDKLARAAMSEHLAAGAVPLIDHLVARGVVVDAGGPDPG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]