| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41408487
Identifier: 41408487
GI number: 41408487
Start: 2685425
End: 2686627
Strand: Reverse
Name: 41408487
Synonym: MAP2389c
Alternate gene names: NA
Gene position: 2686627-2685425 (Counterclockwise)
Preceding gene: 41408488
Following gene: 41408486
Centisome position: 55.63
GC content: 66.33
Gene sequence:
>1203_bases ATGACCGCCCTGAACTATCGCGTGATCGACGTCGACAACCACTATTACGAGCCGCTGGACTCGTTCACCCGCCACCTCGA CAAGAAGTTCAAACGCCGCGGCGTCCAGATGCTCAGCGACGGCAAGCGCACCTGGGCGGTGATCGGCGACCGGGTCAACC ACTTCATCCCCAACCCCACCTTCGACCCGATCATCGTGCCGGGCTGCCTGGACCTGTTGTTCCGCGGCGAGATCCCCGAC GGCGTCGACCCGGCGTCGCTGATGAAGGTCGAGCGGCTGGCCGATCACCCCGAGTACCAGAACCGCGACGCCCGGATCGC GGTGATGGACGAGCAGGACATCGAGACGGCGTTCATGTTGCCGACGTTCGGTTGCGGGGTCGAGGAGGCGCTCAAGCACG ACATCGAGGCGACGATGGCGTCCGTGCACGCGTTCAACCTGTGGCTCGACGAGGACTGGGGCTTCGACCGGCCCGATCAC CGGATCATCGCCGCGCCCATCGTCTCGCTGGCCGATCCGACCAGGGCGGTCGAAGAGGTCGACTTCGTGCTGGCCCGCGG CGCCAAGCTGGTGCTGGTGCGCCCGGCGCCGGTGCCCGGCCTGGTCAAGCCGCGGTCGCTGGGTGATCGCAGCCACGACC CGGTGTGGGCCCGGCTGGCCGAAGCCGGGGTGCCGGTGGGATTTCACCTGTCCGACAGCGGCTATCTGCACATCGCGGCG GCCTGGGGCGGCAAGTCGACGTTCGAGGGCTTCGGCGCGAAGGACCCGCTGGATCAGGTGCTGCTCGACGACCGGGCGAT CCACGACACGATGGCCTCGATGATCGTGCACGGCGTGTTCACCCGGCACCCCAAACTCAAGGCGGTCAGCATCGAAAACG GTTCGTACTTCGTGCATCGGCTGATCAAGCGGCTGAAGAAGGCGGCCAACACCCAGCCCCAGTACTTCCCCGAGGACCCG GTGGAACAGCTGCGCAACAACGTGTGGATCGCCCCGTACTACGAGGACGACCTGCCGGAGCTGGCGCGGGTCATCGGCGT CGACAAGATCCTGTTCGGTTCCGACTGGCCGCACGGCGAAGGCCTTGCATCGCCGGTGTCGTTCACCGCGGAACTGAAGG GATTCAGCGAGTCCGACATTCGAAAGATCATGCGGGACAACGCCCTCGATCTGCTCGGCGTGCAAGTCGGCTCGGCCGCC TGA
Upstream 100 bases:
>100_bases CTGCAGCGCCCCGACGTCATCGAGGGCATCACCAGCTTCCTGGAGAAGCGGCCGCCACGGTTTCCACCCCTGGCCACCTG ACCCGCCGGAAAGGATCATC
Downstream 100 bases:
>100_bases GTATCCGGGACCGACGACGCCCGTGAGCGAATGGACCATAGGGGCGGTTCTCGACGAAATCGCCGACGTCATCCCCGACC GCACGATGACGGTGTGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MTALNYRVIDVDNHYYEPLDSFTRHLDKKFKRRGVQMLSDGKRTWAVIGDRVNHFIPNPTFDPIIVPGCLDLLFRGEIPD GVDPASLMKVERLADHPEYQNRDARIAVMDEQDIETAFMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDH RIIAAPIVSLADPTRAVEEVDFVLARGAKLVLVRPAPVPGLVKPRSLGDRSHDPVWARLAEAGVPVGFHLSDSGYLHIAA AWGGKSTFEGFGAKDPLDQVLLDDRAIHDTMASMIVHGVFTRHPKLKAVSIENGSYFVHRLIKRLKKAANTQPQYFPEDP VEQLRNNVWIAPYYEDDLPELARVIGVDKILFGSDWPHGEGLASPVSFTAELKGFSESDIRKIMRDNALDLLGVQVGSAA
Sequences:
>Translated_400_residues MTALNYRVIDVDNHYYEPLDSFTRHLDKKFKRRGVQMLSDGKRTWAVIGDRVNHFIPNPTFDPIIVPGCLDLLFRGEIPD GVDPASLMKVERLADHPEYQNRDARIAVMDEQDIETAFMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDH RIIAAPIVSLADPTRAVEEVDFVLARGAKLVLVRPAPVPGLVKPRSLGDRSHDPVWARLAEAGVPVGFHLSDSGYLHIAA AWGGKSTFEGFGAKDPLDQVLLDDRAIHDTMASMIVHGVFTRHPKLKAVSIENGSYFVHRLIKRLKKAANTQPQYFPEDP VEQLRNNVWIAPYYEDDLPELARVIGVDKILFGSDWPHGEGLASPVSFTAELKGFSESDIRKIMRDNALDLLGVQVGSAA >Mature_399_residues TALNYRVIDVDNHYYEPLDSFTRHLDKKFKRRGVQMLSDGKRTWAVIGDRVNHFIPNPTFDPIIVPGCLDLLFRGEIPDG VDPASLMKVERLADHPEYQNRDARIAVMDEQDIETAFMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHR IIAAPIVSLADPTRAVEEVDFVLARGAKLVLVRPAPVPGLVKPRSLGDRSHDPVWARLAEAGVPVGFHLSDSGYLHIAAA WGGKSTFEGFGAKDPLDQVLLDDRAIHDTMASMIVHGVFTRHPKLKAVSIENGSYFVHRLIKRLKKAANTQPQYFPEDPV EQLRNNVWIAPYYEDDLPELARVIGVDKILFGSDWPHGEGLASPVSFTAELKGFSESDIRKIMRDNALDLLGVQVGSAA
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44643; Mature: 44512
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALNYRVIDVDNHYYEPLDSFTRHLDKKFKRRGVQMLSDGKRTWAVIGDRVNHFIPNPT CCCEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCC FDPIIVPGCLDLLFRGEIPDGVDPASLMKVERLADHPEYQNRDARIAVMDEQDIETAFML CCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEC PTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHRIIAAPIVSLADPTRAVEEV CCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCEEEECHHHHHCCHHHHHHHH DFVLARGAKLVLVRPAPVPGLVKPRSLGDRSHDPVWARLAEAGVPVGFHLSDSGYLHIAA HHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEEEE AWGGKSTFEGFGAKDPLDQVLLDDRAIHDTMASMIVHGVFTRHPKLKAVSIENGSYFVHR ECCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH LIKRLKKAANTQPQYFPEDPVEQLRNNVWIAPYYEDDLPELARVIGVDKILFGSDWPHGE HHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCC GLASPVSFTAELKGFSESDIRKIMRDNALDLLGVQVGSAA CCCCCHHHHHHHCCCCHHHHHHHHHCCCHHEEEEECCCCC >Mature Secondary Structure TALNYRVIDVDNHYYEPLDSFTRHLDKKFKRRGVQMLSDGKRTWAVIGDRVNHFIPNPT CCEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCC FDPIIVPGCLDLLFRGEIPDGVDPASLMKVERLADHPEYQNRDARIAVMDEQDIETAFML CCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEC PTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHRIIAAPIVSLADPTRAVEEV CCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCEEEECHHHHHCCHHHHHHHH DFVLARGAKLVLVRPAPVPGLVKPRSLGDRSHDPVWARLAEAGVPVGFHLSDSGYLHIAA HHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEEEE AWGGKSTFEGFGAKDPLDQVLLDDRAIHDTMASMIVHGVFTRHPKLKAVSIENGSYFVHR ECCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH LIKRLKKAANTQPQYFPEDPVEQLRNNVWIAPYYEDDLPELARVIGVDKILFGSDWPHGE HHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCC GLASPVSFTAELKGFSESDIRKIMRDNALDLLGVQVGSAA CCCCCHHHHHHHCCCCHHHHHHHHHCCCHHEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA