| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is mtb12 [H]
Identifier: 41408266
GI number: 41408266
Start: 2399641
End: 2400177
Strand: Reverse
Name: mtb12 [H]
Synonym: MAP2168c
Alternate gene names: 41408266
Gene position: 2400177-2399641 (Counterclockwise)
Preceding gene: 41408267
Following gene: 41408265
Centisome position: 49.7
GC content: 68.34
Gene sequence:
>537_bases GTGAAAACCGTGAAGTCCATTGCCACGGGCGTGGCGGCGCTGACCGCCATCGGCGGCCCGGCCGCCGGTGTGGCTTCCAT GGCAGCGCCGACCGGTCTGCATGAGGTGCAGTTGGCGGCGTTCGAAGCGCCGCTGCCGCAAGACCCGCCGCCACCGCCGC CCCCGCCGCCGGGAGCGCCGGGCCAGTTGCCGACGGCGGATCAATTGGCCAACCTCTGCAACCAGGTGACCGATCCGGGC GTGAACTACCGGGAGAAGGCCAACTTGGTGGAAAACGGCGTCAGCCAGAACGAGGGTATGGTGGCCGACCACGACCTGCG GAAGGCGTACCGCAACGGGAACTTCCCCGAGCAGTTCAACGTCACCAACATCGCGCCGGCCGGACCCAACATGGCCCAAG CCGACGTCGGCATCACGGGGCCCAAGTTCGCCGGGCCGGTCAACAAGCACCTGGTGTTCGTCAACCAGGGCGGCAACTGG GTCCTGCAGCACGACGCCGCGATCGCGCTGATCCAGGCGGCCACCGCGATGAACTGA
Upstream 100 bases:
>100_bases GCAAGGCACACTTACACCATCTTCAACCATGAAGACGTGTGACCGCGTGCGGCGCAACCGCAAAACCCCGCCACGGTCCA TGCGCATCGAAGGGGGACCT
Downstream 100 bases:
>100_bases CCGACATCGGTAAACCCTTGCCGGACCGCCGAATTCGTGTACAAGCAGCGACGGTCATCGACCCCCATGCGCCACTCGTC CAGGGGCGCATGGGGGTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MKTVKSIATGVAALTAIGGPAAGVASMAAPTGLHEVQLAAFEAPLPQDPPPPPPPPPGAPGQLPTADQLANLCNQVTDPG VNYREKANLVENGVSQNEGMVADHDLRKAYRNGNFPEQFNVTNIAPAGPNMAQADVGITGPKFAGPVNKHLVFVNQGGNW VLQHDAAIALIQAATAMN
Sequences:
>Translated_178_residues MKTVKSIATGVAALTAIGGPAAGVASMAAPTGLHEVQLAAFEAPLPQDPPPPPPPPPGAPGQLPTADQLANLCNQVTDPG VNYREKANLVENGVSQNEGMVADHDLRKAYRNGNFPEQFNVTNIAPAGPNMAQADVGITGPKFAGPVNKHLVFVNQGGNW VLQHDAAIALIQAATAMN >Mature_178_residues MKTVKSIATGVAALTAIGGPAAGVASMAAPTGLHEVQLAAFEAPLPQDPPPPPPPPPGAPGQLPTADQLANLCNQVTDPG VNYREKANLVENGVSQNEGMVADHDLRKAYRNGNFPEQFNVTNIAPAGPNMAQADVGITGPKFAGPVNKHLVFVNQGGNW VLQHDAAIALIQAATAMN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MTB12 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020235 - ProDom: PD033474 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18279; Mature: 18279
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVKSIATGVAALTAIGGPAAGVASMAAPTGLHEVQLAAFEAPLPQDPPPPPPPPPGAP CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC GQLPTADQLANLCNQVTDPGVNYREKANLVENGVSQNEGMVADHDLRKAYRNGNFPEQFN CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC VTNIAPAGPNMAQADVGITGPKFAGPVNKHLVFVNQGGNWVLQHDAAIALIQAATAMN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHCC >Mature Secondary Structure MKTVKSIATGVAALTAIGGPAAGVASMAAPTGLHEVQLAAFEAPLPQDPPPPPPPPPGAP CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC GQLPTADQLANLCNQVTDPGVNYREKANLVENGVSQNEGMVADHDLRKAYRNGNFPEQFN CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC VTNIAPAGPNMAQADVGITGPKFAGPVNKHLVFVNQGGNWVLQHDAAIALIQAATAMN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]