| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is dosT [H]
Identifier: 41408176
GI number: 41408176
Start: 2286247
End: 2288922
Strand: Reverse
Name: dosT [H]
Synonym: MAP2078c
Alternate gene names: 41408176
Gene position: 2288922-2286247 (Counterclockwise)
Preceding gene: 41408181
Following gene: 41408175
Centisome position: 47.39
GC content: 69.69
Gene sequence:
>2676_bases ATGGCGCCCGAACGGCTAAGGCGCCGTACGGTGACCGGCGCTGGCCGCATGGTGCCGGGAGGTGCGGCACCGACATGGCC GCGCACCCGACCGTTTACTTTGGTATCCATGGACAGCGACCGGGATGACTCCGCCGCCATCCGGCGGGACCGGCGCGAAC TGGACCGCATGCACACCCAGCTCGACGAGCTGATGGCTGCGCGCGACCAGCTGGAACAACTGGTGCGGGTCATCGTCGAA ATCGGCTCCGATCTGGACTTGGACGTCACGCTGCGTCGCGTCCTGAAAGCGGCGATGGAGCTGACCGGCGCCCGCTACGC CGTGCTCTCTTCCCGCGCCTCCGACGGCGCACTCCTCTCGTTCGTGCATGCCGGCCTCGACGCGGACACGGCCCGGCAGC TCGGCGAGCTCGCGGTGGGCGACGGTCTTCGCATCGACGATGTGAGCGTTGATGCGCGCAGCGCCCACCTGTCGGCACAC GACCCACCGCTGCGGGCGCTGCTGGGAATACCGATCACGGTGCGGGCAGCCAACTTTGGCAACCTCTATCTGGCGGACGA CCGGCAAGGGCGCGTGTTCACCGACTCGCAGGAAGGCGCGGTGCGCGCCATGGCCACGGCGGCAGCCGCCGCCATCGACA ACGCGCGACTCTTCGAGCGCGAGCGTGAATCGGCGAAATGGACGAAGGCCAGTCGCGAGATCACCACCGCGCTGCTGTCC GGTGATCCGCAGACGGGTCCGTTGCAGCTCATTGTGAACCGGGCGCTGGAGCTGGCCGGCGCCGAGCAGGCGATCTTGCT GGTCCCGCGAGAGCCCGAGTCGCCCGGCCGGGAGGCCGACACCCTGGTGGTGTCCGCCACCGCGGGCCGCTATGCCTCGC AGGTGATCGGCCGGCAGGTTCCGATGGACGGCTCGACCACCGGCGGTGTCGCGCGGCGCGGCCTGCCGTTGATTACCGAC TCCTTCCAATACCCGATCGAGGGATTCACCGACGTCGGCGAACGCTCGGCGATCGTGATACCGCTGATTGCCGACGGCGC GGTGCTCGGCGTCATCGCCGTCGCGCGCGACCCGCAGCAGCCGCCGTTCGGCAACGACTACCTCGACCTGGTCAGTGACT TCGCCCGGCACGCCGCCATCGCCTTGGCGCTGGCGGCGGGCCGCCAACACGCGCTCAATCAGGAACTGGCCCAAGCGGAT ACGGTCGACGAGGCGGTACGCGCCGCGGCTGAAGAACTGCGCCGGCTGTGGCGCGCCCGCCGGGTGCTGGCCGTCACCTT CCCAAGCCACACCTCTGCTACGGAAACGGCGTTCGGCCCGCCCGAGGTCGTTTCGGTCGGCGAGCCCACGCAGTGGGCCG ATCTGCCGTCGCACATGCACCAGGCGCTCGGCGCGTTGCGCGACGGCGACCTGCTCACCCCGAACACCACGCAGCCCGGG ACGGCGGGCATCGCCCTGCAGCATCCCGACGGCGTGCTGGTCGTCTGGATCGACCTGACCGATGAGCGTTCGTTCACCTT GGAAGACCAGACCCTGCTCACCGTGCTGGCCGGCCGCCTCGGCCAGGGCCTGCAACGGGTGCACCAGGTCGACCAGCAGC GCGAAACCGCACTGGCTCTGCAGCACGCGATCCTCGGTCCCGCCGATCTGCCCAACGGATTCGCGGTGCGCTATCAGGCC GCCACCCGGCCGTTGCAGGTCGGTGGTGACTGGTTCGACATCGTCGACCTCGAGGACGGGCGGGTCGCGTTGGTCGTCGG CGACTGTGTCGGCCATGGGCTCGCGTCCGCCACGGTGATGGGTCAGGTGCGCAGCGCCTGCCGCGCCCTGCTGCTCGAAA ACCCAAGTCCTGCTGCGGCTCTCGCGGGTCTGGACCGATTCGCGGCGCGGCTGCCCGGCGCGCAATGCACCACCGCCGTG TGCGCGGTGCTCACCCCGGACACCGGTGAACTGGTCTACTCCAGCGCCGGGCACCCGCCGCCCATCGTGGTGCACGGCGA CGGCAGCACCCAGATACTCGACGAGGGCCACACCATCGCATTGGGCATCCGACGGGACTGGCCCCGCCCGGAGGCCCGGG TGACCATACCGGCGCGCGCGACCCTGCTGTTGTACACCGACGGGCTGGTCGAACGTCGCCGCAGCCCGCTGGATCGGGGT ATCTACCGCGTCGCCACCGTCGCGCAGGATGCGCGCGGCTCGTCCCTCGACGAGTTGGCGACCCGGATCATGTCCGCCGT CGCGCCGAGCGGCGGCTACCAGGACGACGTGGTGTTGCTGCTGTACCGGCATCCGGCGCCGCTGGAGCTGAACTTCCCCG CCGACGTCAACCAGCTGGCGCCCACTCGCACCGCGTTGCGCAACTGGCTGCGCCGTGTCCGGCTGGACCCGGAGCAGACG TTGAACGTACTGGTCGCCGCCGGGGAGGCGGTCGCCAACGCCATCGAGCACGGACACCGGCACAGCCCGCAGGGCACAAT TCGACTGGGCGCCACCGCGTTAGGCGATCAGGTCCGGTTGACGATCACCGACACCGGCACATGGAAGGTTCCCCAAGCGA CGTCCTATCCGCATCGGGGGCGGGGCATCCCGTTGATGAAAAGCCTGATGAACGATGTCGACATTCGGTCCGACACCGGC GGAACCACCGTCCAGCTCTCCGCAAGGATCACCTGA
Upstream 100 bases:
>100_bases CCCCAGCTCCACCGGTAAAAGGGTACTCATCTCGATGATCGTCGGCGGCGCAATTCAATACCTGGTCAAGATCCGGTAAA GCCGCCGGTGACCTGCCCGG
Downstream 100 bases:
>100_bases TGGTCACCCCGCTGACGCTGGACACCGGCCGTGGTAGCGACGGCAACCCGGTGCTGGTGGCAGTGGGCGAAATCGACCTG AGCAACATCGACGCATTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 891; Mature: 890
Protein sequence:
>891_residues MAPERLRRRTVTGAGRMVPGGAAPTWPRTRPFTLVSMDSDRDDSAAIRRDRRELDRMHTQLDELMAARDQLEQLVRVIVE IGSDLDLDVTLRRVLKAAMELTGARYAVLSSRASDGALLSFVHAGLDADTARQLGELAVGDGLRIDDVSVDARSAHLSAH DPPLRALLGIPITVRAANFGNLYLADDRQGRVFTDSQEGAVRAMATAAAAAIDNARLFERERESAKWTKASREITTALLS GDPQTGPLQLIVNRALELAGAEQAILLVPREPESPGREADTLVVSATAGRYASQVIGRQVPMDGSTTGGVARRGLPLITD SFQYPIEGFTDVGERSAIVIPLIADGAVLGVIAVARDPQQPPFGNDYLDLVSDFARHAAIALALAAGRQHALNQELAQAD TVDEAVRAAAEELRRLWRARRVLAVTFPSHTSATETAFGPPEVVSVGEPTQWADLPSHMHQALGALRDGDLLTPNTTQPG TAGIALQHPDGVLVVWIDLTDERSFTLEDQTLLTVLAGRLGQGLQRVHQVDQQRETALALQHAILGPADLPNGFAVRYQA ATRPLQVGGDWFDIVDLEDGRVALVVGDCVGHGLASATVMGQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAV CAVLTPDTGELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGLVERRRSPLDRG IYRVATVAQDARGSSLDELATRIMSAVAPSGGYQDDVVLLLYRHPAPLELNFPADVNQLAPTRTALRNWLRRVRLDPEQT LNVLVAAGEAVANAIEHGHRHSPQGTIRLGATALGDQVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVDIRSDTG GTTVQLSARIT
Sequences:
>Translated_891_residues MAPERLRRRTVTGAGRMVPGGAAPTWPRTRPFTLVSMDSDRDDSAAIRRDRRELDRMHTQLDELMAARDQLEQLVRVIVE IGSDLDLDVTLRRVLKAAMELTGARYAVLSSRASDGALLSFVHAGLDADTARQLGELAVGDGLRIDDVSVDARSAHLSAH DPPLRALLGIPITVRAANFGNLYLADDRQGRVFTDSQEGAVRAMATAAAAAIDNARLFERERESAKWTKASREITTALLS GDPQTGPLQLIVNRALELAGAEQAILLVPREPESPGREADTLVVSATAGRYASQVIGRQVPMDGSTTGGVARRGLPLITD SFQYPIEGFTDVGERSAIVIPLIADGAVLGVIAVARDPQQPPFGNDYLDLVSDFARHAAIALALAAGRQHALNQELAQAD TVDEAVRAAAEELRRLWRARRVLAVTFPSHTSATETAFGPPEVVSVGEPTQWADLPSHMHQALGALRDGDLLTPNTTQPG TAGIALQHPDGVLVVWIDLTDERSFTLEDQTLLTVLAGRLGQGLQRVHQVDQQRETALALQHAILGPADLPNGFAVRYQA ATRPLQVGGDWFDIVDLEDGRVALVVGDCVGHGLASATVMGQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAV CAVLTPDTGELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGLVERRRSPLDRG IYRVATVAQDARGSSLDELATRIMSAVAPSGGYQDDVVLLLYRHPAPLELNFPADVNQLAPTRTALRNWLRRVRLDPEQT LNVLVAAGEAVANAIEHGHRHSPQGTIRLGATALGDQVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVDIRSDTG GTTVQLSARIT >Mature_890_residues APERLRRRTVTGAGRMVPGGAAPTWPRTRPFTLVSMDSDRDDSAAIRRDRRELDRMHTQLDELMAARDQLEQLVRVIVEI GSDLDLDVTLRRVLKAAMELTGARYAVLSSRASDGALLSFVHAGLDADTARQLGELAVGDGLRIDDVSVDARSAHLSAHD PPLRALLGIPITVRAANFGNLYLADDRQGRVFTDSQEGAVRAMATAAAAAIDNARLFERERESAKWTKASREITTALLSG DPQTGPLQLIVNRALELAGAEQAILLVPREPESPGREADTLVVSATAGRYASQVIGRQVPMDGSTTGGVARRGLPLITDS FQYPIEGFTDVGERSAIVIPLIADGAVLGVIAVARDPQQPPFGNDYLDLVSDFARHAAIALALAAGRQHALNQELAQADT VDEAVRAAAEELRRLWRARRVLAVTFPSHTSATETAFGPPEVVSVGEPTQWADLPSHMHQALGALRDGDLLTPNTTQPGT AGIALQHPDGVLVVWIDLTDERSFTLEDQTLLTVLAGRLGQGLQRVHQVDQQRETALALQHAILGPADLPNGFAVRYQAA TRPLQVGGDWFDIVDLEDGRVALVVGDCVGHGLASATVMGQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAVC AVLTPDTGELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGLVERRRSPLDRGI YRVATVAQDARGSSLDELATRIMSAVAPSGGYQDDVVLLLYRHPAPLELNFPADVNQLAPTRTALRNWLRRVRLDPEQTL NVLVAAGEAVANAIEHGHRHSPQGTIRLGATALGDQVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVDIRSDTGG TTVQLSARIT
Specific function: Interacts with the two-component regulatory system devR/devS (dosR/dosS) involved in onset of the dormancy response. May act as a direct hypoxia sensor (rather than a redox sensor); the normal state is the oxygenated form, while the deoxy form is probably
COG id: COG2203
COG function: function code T; FOG: GAF domain
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR011712 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: NA
Molecular weight: Translated: 95589; Mature: 95458
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPERLRRRTVTGAGRMVPGGAAPTWPRTRPFTLVSMDSDRDDSAAIRRDRRELDRMHTQ CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH LDELMAARDQLEQLVRVIVEIGSDLDLDVTLRRVLKAAMELTGARYAVLSSRASDGALLS HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH FVHAGLDADTARQLGELAVGDGLRIDDVSVDARSAHLSAHDPPLRALLGIPITVRAANFG HHHCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCC NLYLADDRQGRVFTDSQEGAVRAMATAAAAAIDNARLFERERESAKWTKASREITTALLS CEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDPQTGPLQLIVNRALELAGAEQAILLVPREPESPGREADTLVVSATAGRYASQVIGRQV CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHCCCC PMDGSTTGGVARRGLPLITDSFQYPIEGFTDVGERSAIVIPLIADGAVLGVIAVARDPQQ CCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHEEECCCCCC PPFGNDYLDLVSDFARHAAIALALAAGRQHALNQELAQADTVDEAVRAAAEELRRLWRAR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RVLAVTFPSHTSATETAFGPPEVVSVGEPTQWADLPSHMHQALGALRDGDLLTPNTTQPG EEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCC TAGIALQHPDGVLVVWIDLTDERSFTLEDQTLLTVLAGRLGQGLQRVHQVDQQRETALAL CCCEEEECCCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QHAILGPADLPNGFAVRYQAATRPLQVGGDWFDIVDLEDGRVALVVGDCVGHGLASATVM HHHHCCCCCCCCCEEEEEECCCCCEEECCCEEEEEECCCCEEEEEEECHHCCCHHHHHHH GQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAVCAVLTPDTGELVYSSAGHPP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCEEECCCCCCC PIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGLVERRRSPLDRG CEEEECCCCCEEECCCCEEEEEEECCCCCCCCEEEECCCEEEEEEECHHHHHHCCCHHHH IYRVATVAQDARGSSLDELATRIMSAVAPSGGYQDDVVLLLYRHPAPLELNFPADVNQLA HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEECCCCCHHCC PTRTALRNWLRRVRLDPEQTLNVLVAAGEAVANAIEHGHRHSPQGTIRLGATALGDQVRL HHHHHHHHHHHHHCCCHHHHHHHHEECCHHHHHHHHHCCCCCCCCEEEECCEECCCEEEE TITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVDIRSDTGGTTVQLSARIT EEECCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECC >Mature Secondary Structure APERLRRRTVTGAGRMVPGGAAPTWPRTRPFTLVSMDSDRDDSAAIRRDRRELDRMHTQ CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH LDELMAARDQLEQLVRVIVEIGSDLDLDVTLRRVLKAAMELTGARYAVLSSRASDGALLS HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH FVHAGLDADTARQLGELAVGDGLRIDDVSVDARSAHLSAHDPPLRALLGIPITVRAANFG HHHCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCC NLYLADDRQGRVFTDSQEGAVRAMATAAAAAIDNARLFERERESAKWTKASREITTALLS CEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDPQTGPLQLIVNRALELAGAEQAILLVPREPESPGREADTLVVSATAGRYASQVIGRQV CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHCCCC PMDGSTTGGVARRGLPLITDSFQYPIEGFTDVGERSAIVIPLIADGAVLGVIAVARDPQQ CCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHEEECCCCCC PPFGNDYLDLVSDFARHAAIALALAAGRQHALNQELAQADTVDEAVRAAAEELRRLWRAR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RVLAVTFPSHTSATETAFGPPEVVSVGEPTQWADLPSHMHQALGALRDGDLLTPNTTQPG EEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCC TAGIALQHPDGVLVVWIDLTDERSFTLEDQTLLTVLAGRLGQGLQRVHQVDQQRETALAL CCCEEEECCCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QHAILGPADLPNGFAVRYQAATRPLQVGGDWFDIVDLEDGRVALVVGDCVGHGLASATVM HHHHCCCCCCCCCEEEEEECCCCCEEECCCEEEEEECCCCEEEEEEECHHCCCHHHHHHH GQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAVCAVLTPDTGELVYSSAGHPP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCEEECCCCCCC PIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGLVERRRSPLDRG CEEEECCCCCEEECCCCEEEEEEECCCCCCCCEEEECCCEEEEEEECHHHHHHCCCHHHH IYRVATVAQDARGSSLDELATRIMSAVAPSGGYQDDVVLLLYRHPAPLELNFPADVNQLA HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEECCCCCHHCC PTRTALRNWLRRVRLDPEQTLNVLVAAGEAVANAIEHGHRHSPQGTIRLGATALGDQVRL HHHHHHHHHHHHHCCCHHHHHHHHEECCHHHHHHHHHCCCCCCCCEEEECCEECCCEEEE TITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVDIRSDTGGTTVQLSARIT EEECCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]