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The map label for this gene is 41408101

Identifier: 41408101

GI number: 41408101

Start: 2211259

End: 2211951

Strand: Reverse

Name: 41408101

Synonym: MAP2003c

Alternate gene names: NA

Gene position: 2211951-2211259 (Counterclockwise)

Preceding gene: 41408104

Following gene: 41408100

Centisome position: 45.8

GC content: 67.97

Gene sequence:

>693_bases
ATGACCGGATGCCCTCGGAGAGCGGTTTGGCCGCGGCGGGATCCCCCCAGGCGTTCCATTTCATCGGCGGCAGCAGCCGC
TTCGGATGCGTCATGCGTTACAGTATTACAGATGCTGTCAATCCGTAACGATAAGCCGGATGCCGTGCTGGACACCGGCG
AGCGCATCCTGGCGGCCGCGGCCAGCTGTGTGGTCGACTTCGGCGTGGACCGGGTGACCCTGGCCGAGATCGCCCGGCGG
GCCGGCGTCAGCCGGCCGACGGTGTACCGGCGCTGGCCGGACACCCGGTCGATCGTCGCGGCGCTGTTGACCCGGCATGT
CACCGACGTGATGCGGGCCGCGCCGTTGCTCGGCGACGACCGGGAATCGCTGGTGCGACAGATCGTTACGGTGGCCGACC
TGTTGCGCCAGGACCGACTGGTGATGTCCGTGCTGCACTCGGAGCTGGCGCCGATCTACATCACCGAGCGGCTCGGCACC
AGCCAGCACATGTTGATCGACGCCCTCGCCGCCCGGCTGCGGGTGGCCCAGCGTAATGGCAGCGTCCGGCCCGGCGACCC
GGTGCAGATGGCCACCATGGTGTTGCTGATCGCCCAGTCGACCATCCAGTCGGCGCAGATCGTCGAACCGCTGCTCGACG
CCGAGGCGCTGGCCAAGGAACTCGCCTACTCGCTGAACGGATACCTGTCGTGA

Upstream 100 bases:

>100_bases
TCCCGGTCCGCCGGCGATAGCGTGGACGGACGCAACCGCACCTGCTCGGGTCGCGGCTCGGCCGTGCGGGACCCCTCGAT
CCCCACGGCCTGCTGCAGCA

Downstream 100 bases:

>100_bases
TCCCCGACCCCAGCGCGCTCAACGCCGCCCGCCGGACCGCCGACCTGGCCGCGCTCGCCGAGGGTGAGCCGCTGGACGTG
CTGGTGATCGGCGGCGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTGCPRRAVWPRRDPPRRSISSAAAAASDASCVTVLQMLSIRNDKPDAVLDTGERILAAAASCVVDFGVDRVTLAEIARR
AGVSRPTVYRRWPDTRSIVAALLTRHVTDVMRAAPLLGDDRESLVRQIVTVADLLRQDRLVMSVLHSELAPIYITERLGT
SQHMLIDALAARLRVAQRNGSVRPGDPVQMATMVLLIAQSTIQSAQIVEPLLDAEALAKELAYSLNGYLS

Sequences:

>Translated_230_residues
MTGCPRRAVWPRRDPPRRSISSAAAAASDASCVTVLQMLSIRNDKPDAVLDTGERILAAAASCVVDFGVDRVTLAEIARR
AGVSRPTVYRRWPDTRSIVAALLTRHVTDVMRAAPLLGDDRESLVRQIVTVADLLRQDRLVMSVLHSELAPIYITERLGT
SQHMLIDALAARLRVAQRNGSVRPGDPVQMATMVLLIAQSTIQSAQIVEPLLDAEALAKELAYSLNGYLS
>Mature_229_residues
TGCPRRAVWPRRDPPRRSISSAAAAASDASCVTVLQMLSIRNDKPDAVLDTGERILAAAASCVVDFGVDRVTLAEIARRA
GVSRPTVYRRWPDTRSIVAALLTRHVTDVMRAAPLLGDDRESLVRQIVTVADLLRQDRLVMSVLHSELAPIYITERLGTS
QHMLIDALAARLRVAQRNGSVRPGDPVQMATMVLLIAQSTIQSAQIVEPLLDAEALAKELAYSLNGYLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25045; Mature: 24914

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGCPRRAVWPRRDPPRRSISSAAAAASDASCVTVLQMLSIRNDKPDAVLDTGERILAAA
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ASCVVDFGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIVAALLTRHVTDVMRAAPLLGDD
HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
RESLVRQIVTVADLLRQDRLVMSVLHSELAPIYITERLGTSQHMLIDALAARLRVAQRNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHCC
SVRPGDPVQMATMVLLIAQSTIQSAQIVEPLLDAEALAKELAYSLNGYLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TGCPRRAVWPRRDPPRRSISSAAAAASDASCVTVLQMLSIRNDKPDAVLDTGERILAAA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ASCVVDFGVDRVTLAEIARRAGVSRPTVYRRWPDTRSIVAALLTRHVTDVMRAAPLLGDD
HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
RESLVRQIVTVADLLRQDRLVMSVLHSELAPIYITERLGTSQHMLIDALAARLRVAQRNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHCC
SVRPGDPVQMATMVLLIAQSTIQSAQIVEPLLDAEALAKELAYSLNGYLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]