| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41407949
Identifier: 41407949
GI number: 41407949
Start: 2028923
End: 2030515
Strand: Direct
Name: 41407949
Synonym: MAP1851
Alternate gene names: NA
Gene position: 2028923-2030515 (Clockwise)
Preceding gene: 41407948
Following gene: 41407950
Centisome position: 42.01
GC content: 67.67
Gene sequence:
>1593_bases ATGCCCAATTCCTTTGAGCTGGACGGACGCGGCCCCTCGGACCGGCAGCTGTTCGGCATCGGCATCGCGGTGCTGGTGGT CAGCGCCCTGCTCACCACCGTGATGTTGGTGAAATCGACTGGCAGGCTGGACGATTACGTGCGGGTGGTGGCCGACCTGG TCAACGTGGGCGACGGCCTGCCGCAGAAGTCGGACGTCAAATACCACGGCGTGCTGGTCGGCATGGTCGACGACGTCGTC CCCGCGGCCCACGGCAAGCCCAACTATGTCCACATCAACCTGAAAGAGGACTACGCCAAGTCGATTCCGGCCAGTGTGAC CGCACGAGTGGTGCCCAGCAACGTGTTCGCCGTGTCGTCGGTGCAACTGGTGGGTAACGGGCCCGGCACGAAAATCCGCG ACGGCGCCCATATTCCGGAGGACAAGCGGCTGCCCACCGTGTTGTTCCAGACGACGGTCAGCAAGCTGCGCGATCTGCTC GCCGCCGCGGGGCGCGGCCGCGATGACAGGTCGGTGGGAATTCTGGCCGCCCTGGGGGCGGCTACCGATCATCGGCGGGT CAGCCTGCTCAACGCCGGGGCGCAACTGAATCGCCTTCTCGATCAACTCAATTCGATTGTCAGCACCGACACCGGCCCGT CCACGGTGTCGGCCCTGCTGGATGCGACGCGGGGCCTGGCGCAGACGGCGCCGGATCTGTTGGACGCGTTGCACCAGGCC GTCGAGCCGATGCAGACCTTCGCCGAGACACGCGGCCAGCTGGCGTCGCTGCTGTCGGGCGCCGACTACACGGTGGGGAC GACGCGTCAGTCCTTCGACAACCACATCGACCAATTGATCAGGATCACCGCAGATTTCACACCGGTGCTCGGTGTGTTGG CGCAGAAGTCGAACAACTTCGTGCCCGCGGTCACCAAACTGGACAACCTGGCCAACCAGTTCATGGAGCAGGTCTGGAAC CCGCAGACCAACCTGGGCAACATGCGCGCGATGCTGACCTTCACCCCCAGCTCCACCTACACCCGCGCCGACTGCCCGCA TTACGGAGAGCTGAAGGGGCCCAGCTGCTTCACCGCACCGCTGATTCCGGTGCGGCCCGACCTGCCCGACGTGCTGCTGC CACAGAACTATCAGCCGCCCAAGGATCTGGCGCCGCCGCCGGGCACGGTGATCGGCCCGGACGGGAACCTCGTCGCGGTG GGCCCGCCGCTGATCAACCCCACCCCGAATTTGACCGACCCCAATCCCCCACTGGCCCCGGGGATTACCCCGTCGCCGCC GGTGCCCGGGAGCGCCAATCCGGACAACCCGTCACCGGGGGCGCCGGCGACACCGCAACCGCAGCAACCGTGGGTCGCGC CGGTGGCGCCCAAGGCCCCGTGGATTCCCCAGTCCTCGTTCCGGCCGTCGTTCGGCGGCAACGTGGGTCCCGTGGGGAGC CAATACGAACGAACCATGCTGGGCGCGATCACCGGTGGACCCGCGTCGGAGGCCACCGAGTTGCTGCTGGGCCCGGTCGC CCGCGGAACGACGGTGTCGCTGGCGCATCCGCCCGGGCCGTCGCCCGCGCCTCGACCCGGGGAGGGCAAATGA
Upstream 100 bases:
>100_bases CGGTGGTGATCATCGTGAACATGCTGCTCACCATGGCGCTGTGGGGCGTCGATTCCGGCGCAAGGTTCGGCGGGTAGGCC GGTGGCGAGGTCGGTGGACG
Downstream 100 bases:
>100_bases GGTTTCGCGGCCCGCTCATCGCGCTGACGCTGTTCATGATCGTCTCGCTGACGCTGACCTGGCTGGTGTATGTGAGCCTG CGCCGCGACGTGGCCGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Virulence Factor Mce Family Protein; Secreted Protein; Mce Related Protein; MCE Family Protein; Mammalian Cell Entry Related Domain-Containing Protein; MCE-Family A; Mce Protein Mce5A; Mce-Related Protein
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MPNSFELDGRGPSDRQLFGIGIAVLVVSALLTTVMLVKSTGRLDDYVRVVADLVNVGDGLPQKSDVKYHGVLVGMVDDVV PAAHGKPNYVHINLKEDYAKSIPASVTARVVPSNVFAVSSVQLVGNGPGTKIRDGAHIPEDKRLPTVLFQTTVSKLRDLL AAAGRGRDDRSVGILAALGAATDHRRVSLLNAGAQLNRLLDQLNSIVSTDTGPSTVSALLDATRGLAQTAPDLLDALHQA VEPMQTFAETRGQLASLLSGADYTVGTTRQSFDNHIDQLIRITADFTPVLGVLAQKSNNFVPAVTKLDNLANQFMEQVWN PQTNLGNMRAMLTFTPSSTYTRADCPHYGELKGPSCFTAPLIPVRPDLPDVLLPQNYQPPKDLAPPPGTVIGPDGNLVAV GPPLINPTPNLTDPNPPLAPGITPSPPVPGSANPDNPSPGAPATPQPQQPWVAPVAPKAPWIPQSSFRPSFGGNVGPVGS QYERTMLGAITGGPASEATELLLGPVARGTTVSLAHPPGPSPAPRPGEGK
Sequences:
>Translated_530_residues MPNSFELDGRGPSDRQLFGIGIAVLVVSALLTTVMLVKSTGRLDDYVRVVADLVNVGDGLPQKSDVKYHGVLVGMVDDVV PAAHGKPNYVHINLKEDYAKSIPASVTARVVPSNVFAVSSVQLVGNGPGTKIRDGAHIPEDKRLPTVLFQTTVSKLRDLL AAAGRGRDDRSVGILAALGAATDHRRVSLLNAGAQLNRLLDQLNSIVSTDTGPSTVSALLDATRGLAQTAPDLLDALHQA VEPMQTFAETRGQLASLLSGADYTVGTTRQSFDNHIDQLIRITADFTPVLGVLAQKSNNFVPAVTKLDNLANQFMEQVWN PQTNLGNMRAMLTFTPSSTYTRADCPHYGELKGPSCFTAPLIPVRPDLPDVLLPQNYQPPKDLAPPPGTVIGPDGNLVAV GPPLINPTPNLTDPNPPLAPGITPSPPVPGSANPDNPSPGAPATPQPQQPWVAPVAPKAPWIPQSSFRPSFGGNVGPVGS QYERTMLGAITGGPASEATELLLGPVARGTTVSLAHPPGPSPAPRPGEGK >Mature_529_residues PNSFELDGRGPSDRQLFGIGIAVLVVSALLTTVMLVKSTGRLDDYVRVVADLVNVGDGLPQKSDVKYHGVLVGMVDDVVP AAHGKPNYVHINLKEDYAKSIPASVTARVVPSNVFAVSSVQLVGNGPGTKIRDGAHIPEDKRLPTVLFQTTVSKLRDLLA AAGRGRDDRSVGILAALGAATDHRRVSLLNAGAQLNRLLDQLNSIVSTDTGPSTVSALLDATRGLAQTAPDLLDALHQAV EPMQTFAETRGQLASLLSGADYTVGTTRQSFDNHIDQLIRITADFTPVLGVLAQKSNNFVPAVTKLDNLANQFMEQVWNP QTNLGNMRAMLTFTPSSTYTRADCPHYGELKGPSCFTAPLIPVRPDLPDVLLPQNYQPPKDLAPPPGTVIGPDGNLVAVG PPLINPTPNLTDPNPPLAPGITPSPPVPGSANPDNPSPGAPATPQPQQPWVAPVAPKAPWIPQSSFRPSFGGNVGPVGSQ YERTMLGAITGGPASEATELLLGPVARGTTVSLAHPPGPSPAPRPGEGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55569; Mature: 55438
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNSFELDGRGPSDRQLFGIGIAVLVVSALLTTVMLVKSTGRLDDYVRVVADLVNVGDGL CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC PQKSDVKYHGVLVGMVDDVVPAAHGKPNYVHINLKEDYAKSIPASVTARVVPSNVFAVSS CCCCCCEEHEEEEEHHHHHHHCCCCCCCEEEEEECHHHHHHCCCHHEEEECCCCEEEEEE VQLVGNGPGTKIRDGAHIPEDKRLPTVLFQTTVSKLRDLLAAAGRGRDDRSVGILAALGA EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC ATDHRRVSLLNAGAQLNRLLDQLNSIVSTDTGPSTVSALLDATRGLAQTAPDLLDALHQA CCCCCEEHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEPMQTFAETRGQLASLLSGADYTVGTTRQSFDNHIDQLIRITADFTPVLGVLAQKSNNF HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VPAVTKLDNLANQFMEQVWNPQTNLGNMRAMLTFTPSSTYTRADCPHYGELKGPSCFTAP CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC LIPVRPDLPDVLLPQNYQPPKDLAPPPGTVIGPDGNLVAVGPPLINPTPNLTDPNPPLAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC GITPSPPVPGSANPDNPSPGAPATPQPQQPWVAPVAPKAPWIPQSSFRPSFGGNVGPVGS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QYERTMLGAITGGPASEATELLLGPVARGTTVSLAHPPGPSPAPRPGEGK HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure PNSFELDGRGPSDRQLFGIGIAVLVVSALLTTVMLVKSTGRLDDYVRVVADLVNVGDGL CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC PQKSDVKYHGVLVGMVDDVVPAAHGKPNYVHINLKEDYAKSIPASVTARVVPSNVFAVSS CCCCCCEEHEEEEEHHHHHHHCCCCCCCEEEEEECHHHHHHCCCHHEEEECCCCEEEEEE VQLVGNGPGTKIRDGAHIPEDKRLPTVLFQTTVSKLRDLLAAAGRGRDDRSVGILAALGA EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC ATDHRRVSLLNAGAQLNRLLDQLNSIVSTDTGPSTVSALLDATRGLAQTAPDLLDALHQA CCCCCEEHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEPMQTFAETRGQLASLLSGADYTVGTTRQSFDNHIDQLIRITADFTPVLGVLAQKSNNF HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VPAVTKLDNLANQFMEQVWNPQTNLGNMRAMLTFTPSSTYTRADCPHYGELKGPSCFTAP CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC LIPVRPDLPDVLLPQNYQPPKDLAPPPGTVIGPDGNLVAVGPPLINPTPNLTDPNPPLAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC GITPSPPVPGSANPDNPSPGAPATPQPQQPWVAPVAPKAPWIPQSSFRPSFGGNVGPVGS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QYERTMLGAITGGPASEATELLLGPVARGTTVSLAHPPGPSPAPRPGEGK HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA