Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 41407296

GI number: 41407296

Start: 1257563

End: 1259200

Strand: Direct

Name: ydiF [H]

Synonym: MAP1198

Alternate gene names: 41407296

Gene position: 1257563-1259200 (Clockwise)

Preceding gene: 41407295

Following gene: 41407297

Centisome position: 26.04

GC content: 71.37

Gene sequence:

>1638_bases
GTGATCACGGCCACGGACCTCGAGGTCCGCGCGGGCGCGCGCATCCTGCTCTCACCCGACGGGCCCGACCTGCGCGTGCA
GCCCGGCGACCGGATCGGGTTGGTCGGCCGCAACGGCGCCGGCAAGACCACCACCCTGCGCATCCTGGCGGGGGAGACCG
AGCCGTACACCGGGACGATCGCCCGCAGCGGCGAAATCGGTTATCTGCCACAGGATCCCAAAGAGGGCGACCTGGACGTG
CTGGCCCGCGACCGGGTGCTGTCGGCGCGCGGGCTGGACGTGTTGCTCACCGACCTGGAAAAGCAGCAGGCGTTGATGGC
CGAGGTCGCCGACGACGACGCCCGCGACCGCGCGATCCGCCGGTACGGCCAGCTCGAGGAGCGTTTCGTGGCCCTGGGCG
GCTACGGCGCCGAGAGCGAGGCCAGCCGCATCTGCGCCAGCCTCGGCCTGCCGGAACGGGTGCTGACGCAGCAGCTGCGC
ACCCTGTCCGGCGGGCAGCGCCGCCGGGTGGAGCTGGCCCGCATCCTGTTCGCCGCCGCTGAGGGTGGGGCCACCGGTTC
GGGTTCGGCGACCACGCTCCTGCTCGACGAGCCGACCAACCACCTGGACGCCGATTCGATCGGCTGGCTGCGCGACTTCC
TGCGGGCCCACACCGGCGGGCTGGTGATCATCAGCCACAACGTCGAGCTGCTCGCCGACGTCGTCAACCGGGTCTGGTTT
TTGGACGCGGTGCGCGGCGAGGTCGACGTCTACAACATGAGCTGGCAGAAGTACCTCGACGCGCGGGCCACCGACGAACA
GCGCCGCCGCCGGGAACGCGCCAATGCCGAACGCAAGGCCGCCGCGCTGCGCACCCAGGCCGCCAAGCTGGGCGCCAAGG
CCACCAAAGCCGTTGCGGCACAGAACATGTTGCGTCGCGCCGACCGGATGATGGCCGCACTCGACGAGGAGCGCGTCGCC
GACAAGGTGGCCCGCATCAAGTTCCCCACGCCGGCCGCCTGCGGGCGCACCCCGCTGACCGCCACCGGGCTGAGCAAGTC
CTACGGGTCGCTGGAGGTGTTCAGCGGGGTGGACCTGGCCATCGACCGCGGCTCCCGGGTGGTGGTGCTGGGCCTCAACG
GCGCCGGCAAGACCACCCTGCTGCGCCTGCTGGCCGGCGCCGAGACGCCCGACACCGGACGGATCGAGCCCGGACACGGT
TTGCGGATCGGCTATTTCGCGCAGGAACACGACACGCTGGACAACGATGCGACCGTCTGGCAGAACATCCGCCACGCCGC
ACCGGATTCCGGCGAGCAGGACCTGCGCGGCCTGCTGGGGGCGTTCATGTTCAGCGGGCCCCAACTCGACCAACCGGCCG
GCACGCTGTCCGGCGGCGAGAAGACCCGGCTGGCACTGGCCGGTCTGGTGGCGTCGACCGCCAACGTGTTGCTGCTCGAC
GAGCCGACCAACAACCTCGATCCCGCCTCGCGCGAGCAGGTGCTCGACGCGCTGCGCAGCTACACCGGCGCGGTGGTGCT
GGTGACGCACGACCCCGGCGCCGCCGAGGCCCTCGACCCGCAGCGGGTGGTGCTGTTGCCCGACGGCACCGAGGACTACT
GGTCCGACGAATACCGCGATCTCATCGAGCTCGCCTGA

Upstream 100 bases:

>100_bases
TGCTCACCGCCAACTTCGAGGAAGCGGTTGCCGCGCGCGCGGAACGACGGCCGCCGGTGTTCACCGACGACAAATAGTTT
TTCAGTTCAGGAGAGCGATC

Downstream 100 bases:

>100_bases
TCTGACGGCACGCCGCCGCAGGCGATTCGGCGAAATCCGCCCGCACCCGGCGACGGCTTTCTACTCTAGGGGCTTGCGAT
GTGTCCGGGCGTCGGAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MITATDLEVRAGARILLSPDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAGETEPYTGTIARSGEIGYLPQDPKEGDLDV
LARDRVLSARGLDVLLTDLEKQQALMAEVADDDARDRAIRRYGQLEERFVALGGYGAESEASRICASLGLPERVLTQQLR
TLSGGQRRRVELARILFAAAEGGATGSGSATTLLLDEPTNHLDADSIGWLRDFLRAHTGGLVIISHNVELLADVVNRVWF
LDAVRGEVDVYNMSWQKYLDARATDEQRRRRERANAERKAAALRTQAAKLGAKATKAVAAQNMLRRADRMMAALDEERVA
DKVARIKFPTPAACGRTPLTATGLSKSYGSLEVFSGVDLAIDRGSRVVVLGLNGAGKTTLLRLLAGAETPDTGRIEPGHG
LRIGYFAQEHDTLDNDATVWQNIRHAAPDSGEQDLRGLLGAFMFSGPQLDQPAGTLSGGEKTRLALAGLVASTANVLLLD
EPTNNLDPASREQVLDALRSYTGAVVLVTHDPGAAEALDPQRVVLLPDGTEDYWSDEYRDLIELA

Sequences:

>Translated_545_residues
MITATDLEVRAGARILLSPDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAGETEPYTGTIARSGEIGYLPQDPKEGDLDV
LARDRVLSARGLDVLLTDLEKQQALMAEVADDDARDRAIRRYGQLEERFVALGGYGAESEASRICASLGLPERVLTQQLR
TLSGGQRRRVELARILFAAAEGGATGSGSATTLLLDEPTNHLDADSIGWLRDFLRAHTGGLVIISHNVELLADVVNRVWF
LDAVRGEVDVYNMSWQKYLDARATDEQRRRRERANAERKAAALRTQAAKLGAKATKAVAAQNMLRRADRMMAALDEERVA
DKVARIKFPTPAACGRTPLTATGLSKSYGSLEVFSGVDLAIDRGSRVVVLGLNGAGKTTLLRLLAGAETPDTGRIEPGHG
LRIGYFAQEHDTLDNDATVWQNIRHAAPDSGEQDLRGLLGAFMFSGPQLDQPAGTLSGGEKTRLALAGLVASTANVLLLD
EPTNNLDPASREQVLDALRSYTGAVVLVTHDPGAAEALDPQRVVLLPDGTEDYWSDEYRDLIELA
>Mature_545_residues
MITATDLEVRAGARILLSPDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAGETEPYTGTIARSGEIGYLPQDPKEGDLDV
LARDRVLSARGLDVLLTDLEKQQALMAEVADDDARDRAIRRYGQLEERFVALGGYGAESEASRICASLGLPERVLTQQLR
TLSGGQRRRVELARILFAAAEGGATGSGSATTLLLDEPTNHLDADSIGWLRDFLRAHTGGLVIISHNVELLADVVNRVWF
LDAVRGEVDVYNMSWQKYLDARATDEQRRRRERANAERKAAALRTQAAKLGAKATKAVAAQNMLRRADRMMAALDEERVA
DKVARIKFPTPAACGRTPLTATGLSKSYGSLEVFSGVDLAIDRGSRVVVLGLNGAGKTTLLRLLAGAETPDTGRIEPGHG
LRIGYFAQEHDTLDNDATVWQNIRHAAPDSGEQDLRGLLGAFMFSGPQLDQPAGTLSGGEKTRLALAGLVASTANVLLLD
EPTNNLDPASREQVLDALRSYTGAVVLVTHDPGAAEALDPQRVVLLPDGTEDYWSDEYRDLIELA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=512, Percent_Identity=30.46875, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI10947137, Length=498, Percent_Identity=29.718875502008, Blast_Score=192, Evalue=8e-49,
Organism=Homo sapiens, GI27881506, Length=498, Percent_Identity=29.718875502008, Blast_Score=192, Evalue=8e-49,
Organism=Homo sapiens, GI10947135, Length=502, Percent_Identity=32.4701195219124, Blast_Score=162, Evalue=8e-40,
Organism=Homo sapiens, GI69354671, Length=502, Percent_Identity=32.4701195219124, Blast_Score=162, Evalue=8e-40,
Organism=Homo sapiens, GI116734710, Length=244, Percent_Identity=29.9180327868852, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI27477115, Length=191, Percent_Identity=29.8429319371728, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI31657092, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI27881501, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=6e-11,
Organism=Homo sapiens, GI30795238, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI1787041, Length=545, Percent_Identity=30.2752293577982, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1789751, Length=517, Percent_Identity=32.495164410058, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI2367384, Length=498, Percent_Identity=32.9317269076305, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1787182, Length=506, Percent_Identity=30.0395256916996, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI87081782, Length=566, Percent_Identity=26.8551236749117, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788165, Length=173, Percent_Identity=34.1040462427746, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=33.4905660377358, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=29.1866028708134, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=210, Percent_Identity=33.8095238095238, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=34.4660194174757, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=30.8016877637131, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789873, Length=194, Percent_Identity=35.0515463917526, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787758, Length=187, Percent_Identity=31.0160427807487, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786703, Length=196, Percent_Identity=30.6122448979592, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI48994943, Length=178, Percent_Identity=30.8988764044944, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=29.2079207920792, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=30.0925925925926, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1790525, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789593, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788053, Length=220, Percent_Identity=29.5454545454545, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786253, Length=152, Percent_Identity=33.5526315789474, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=30.3030303030303, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=522, Percent_Identity=27.3946360153257, Blast_Score=186, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI17553372, Length=554, Percent_Identity=29.9638989169675, Blast_Score=185, Evalue=7e-47,
Organism=Caenorhabditis elegans, GI17555318, Length=501, Percent_Identity=26.3473053892216, Blast_Score=182, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17565586, Length=225, Percent_Identity=27.1111111111111, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=244, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=218, Percent_Identity=30.7339449541284, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=28.7545787545788, Blast_Score=191, Evalue=3e-49,
Organism=Saccharomyces cerevisiae, GI6320874, Length=511, Percent_Identity=28.9628180039139, Blast_Score=186, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6324314, Length=181, Percent_Identity=33.7016574585635, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323278, Length=173, Percent_Identity=29.4797687861272, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6325030, Length=183, Percent_Identity=30.0546448087432, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24642252, Length=497, Percent_Identity=30.5835010060362, Blast_Score=208, Evalue=7e-54,
Organism=Drosophila melanogaster, GI18859989, Length=497, Percent_Identity=30.5835010060362, Blast_Score=208, Evalue=7e-54,
Organism=Drosophila melanogaster, GI24666836, Length=519, Percent_Identity=30.2504816955684, Blast_Score=202, Evalue=5e-52,
Organism=Drosophila melanogaster, GI24641342, Length=520, Percent_Identity=31.3461538461538, Blast_Score=195, Evalue=6e-50,
Organism=Drosophila melanogaster, GI116007184, Length=183, Percent_Identity=33.879781420765, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221500365, Length=183, Percent_Identity=33.879781420765, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666092, Length=212, Percent_Identity=33.4905660377358, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=29.9065420560748, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=229, Percent_Identity=30.1310043668122, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582014, Length=189, Percent_Identity=32.8042328042328, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582012, Length=189, Percent_Identity=32.8042328042328, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281363262, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24653245, Length=203, Percent_Identity=29.064039408867, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI281362751, Length=189, Percent_Identity=29.1005291005291, Blast_Score=66, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24650853, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58736; Mature: 58736

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITATDLEVRAGARILLSPDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAGETEPYTGTI
CCCCCCEEECCCCEEEECCCCCCEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCEEEE
ARSGEIGYLPQDPKEGDLDVLARDRVLSARGLDVLLTDLEKQQALMAEVADDDARDRAIR
EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RYGQLEERFVALGGYGAESEASRICASLGLPERVLTQQLRTLSGGQRRRVELARILFAAA
HHHHHHHHEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
EGGATGSGSATTLLLDEPTNHLDADSIGWLRDFLRAHTGGLVIISHNVELLADVVNRVWF
CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
LDAVRGEVDVYNMSWQKYLDARATDEQRRRRERANAERKAAALRTQAAKLGAKATKAVAA
HHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHH
QNMLRRADRMMAALDEERVADKVARIKFPTPAACGRTPLTATGLSKSYGSLEVFSGVDLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCEEE
IDRGSRVVVLGLNGAGKTTLLRLLAGAETPDTGRIEPGHGLRIGYFAQEHDTLDNDATVW
EECCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHH
QNIRHAAPDSGEQDLRGLLGAFMFSGPQLDQPAGTLSGGEKTRLALAGLVASTANVLLLD
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
EPTNNLDPASREQVLDALRSYTGAVVLVTHDPGAAEALDPQRVVLLPDGTEDYWSDEYRD
CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LIELA
HHHCC
>Mature Secondary Structure
MITATDLEVRAGARILLSPDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAGETEPYTGTI
CCCCCCEEECCCCEEEECCCCCCEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCEEEE
ARSGEIGYLPQDPKEGDLDVLARDRVLSARGLDVLLTDLEKQQALMAEVADDDARDRAIR
EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RYGQLEERFVALGGYGAESEASRICASLGLPERVLTQQLRTLSGGQRRRVELARILFAAA
HHHHHHHHEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
EGGATGSGSATTLLLDEPTNHLDADSIGWLRDFLRAHTGGLVIISHNVELLADVVNRVWF
CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
LDAVRGEVDVYNMSWQKYLDARATDEQRRRRERANAERKAAALRTQAAKLGAKATKAVAA
HHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHH
QNMLRRADRMMAALDEERVADKVARIKFPTPAACGRTPLTATGLSKSYGSLEVFSGVDLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCEEE
IDRGSRVVVLGLNGAGKTTLLRLLAGAETPDTGRIEPGHGLRIGYFAQEHDTLDNDATVW
EECCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHH
QNIRHAAPDSGEQDLRGLLGAFMFSGPQLDQPAGTLSGGEKTRLALAGLVASTANVLLLD
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
EPTNNLDPASREQVLDALRSYTGAVVLVTHDPGAAEALDPQRVVLLPDGTEDYWSDEYRD
CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LIELA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]