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The map label for this gene is rpoZ [H]

Identifier: 41407222

GI number: 41407222

Start: 1177356

End: 1177682

Strand: Direct

Name: rpoZ [H]

Synonym: MAP1124

Alternate gene names: 41407222

Gene position: 1177356-1177682 (Clockwise)

Preceding gene: 41407221

Following gene: 41407223

Centisome position: 24.38

GC content: 68.5

Gene sequence:

>327_bases
GTGACTAACTCGCAGTCCGACGCGGCGCTGGCCGCCGTCCTCGACCGGTTCGATCCGTCCGCCGGGGGCCCGGGCGCCTA
CGACACCCCGCTGGGCATCACCAACCCGCCCATCGACGAGCTGCTGGACCGCGTCTCGAGCAAGTACGCGCTGGTCATCT
ACGCGGCCAAGCGGGCCCGCCAGATCAACGACTACTACAACCAGCTCGGCGAGGGCATCCTCGAATACGTGGGCCCGCTG
GTCGAGCCGGGGCTGCAGGAGAAACCGCTTTCGATCGCGCTGCGCGAGATCCACGGCGACCTGCTCGAGCACACCGAGGG
CGAGTAA

Upstream 100 bases:

>100_bases
CAGACCACCTCCCATCCCGATTGAGCACCGAATCCTCAATATTTTTCAGTGGCTTTCCGGTAGCGACGAGCCGCTCCAAT
CCGCCAGGAGATTGACCTAC

Downstream 100 bases:

>100_bases
CGGGGCCGGGCCGGGCGCGCTGTGTACGACCGCAATCGGGCTTCCACACGGGCCGCGAGGATCGTCGTCGGCGTCTCCGG
CGGCATCGCCGCCTACAAGG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPL
VEPGLQEKPLSIALREIHGDLLEHTEGE

Sequences:

>Translated_108_residues
MTNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPL
VEPGLQEKPLSIALREIHGDLLEHTEGE
>Mature_107_residues
TNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLV
EPGLQEKPLSIALREIHGDLLEHTEGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11695; Mature: 11564

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRAR
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
QINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRAR
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
QINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]