Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 41407176

GI number: 41407176

Start: 1131850

End: 1132353

Strand: Direct

Name: yqgF [C]

Synonym: MAP1078

Alternate gene names: 41407176

Gene position: 1131850-1132353 (Clockwise)

Preceding gene: 41407175

Following gene: 41407177

Centisome position: 23.43

GC content: 77.58

Gene sequence:

>504_bases
GTGGTCTTGACACAGCACCGCGTCCCCGACCGGCCCGGCGACCCTGACCAGGACCCCGGCCGGGGCCGGCGGCTCGGCAT
CGACGTGGGCAGCGTGCGCATCGGGGTGGCCTGCAGCGACCCCGACGCCGTGCTGGCCACCCCGGTCGAGACCGTGCGCC
GCGACCGCTCCGGCAAACACCTGCGCCGGCTGGCCGCGCTGGTCACCGAGCTCGGGGCCGTCGAGGTCGTCGTCGGGCTG
CCGCGCACCCTGGCCGACCGCACCGGCACGTCGGCGCTGGACGCCATCGACCTGGCCGACCAGTTGGCCCGGCGGATCGC
GCCCACCCCGGTGCGGCTGGCCGACGAGCGGCTGACCACCGTGGCCGCGCAGCGCTCGCTGCGCGCCGCCGGGGTGCGCG
CCAAGGAACAGCGCGCGGTGATCGACCAGGCGGCGGCGGTGGCCATCCTGCAGAGCTGGCTGGACCAGCGCCGCGCGGCG
ACCCGGGAGGCCGGCGATGGTTGA

Upstream 100 bases:

>100_bases
GGCGGACCTGGCGCAGGGATCGGGCAAGGATCCGGCCGGCATCGACGCGGCGCTGGACGCCGTGCGTTCCGAGATCGCCG
CGATAGCGCGGGTCGGTTGA

Downstream 100 bases:

>100_bases
CAGCGCCCGCCGCGAGCGCGCCGAGCCCGAGGCGGTGGGGCCGCCGCGGCGCAGATCCAGCCGGATGGCCCGGAACAGGG
CCGAGCGGGGCCGGCGCCGG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MVLTQHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGL
PRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAA
TREAGDG

Sequences:

>Translated_167_residues
MVLTQHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGL
PRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAA
TREAGDG
>Mature_167_residues
MVLTQHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGL
PRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAA
TREAGDG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_MYCPA (Q741L2)

Other databases:

- EMBL:   AE016958
- RefSeq:   NP_960012.1
- ProteinModelPortal:   Q741L2
- SMR:   Q741L2
- EnsemblBacteria:   EBMYCT00000037735
- GeneID:   2717638
- GenomeReviews:   AE016958_GR
- KEGG:   mpa:MAP1078
- NMPDR:   fig|262316.1.peg.1078
- GeneTree:   EBGT00050000017543
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17845; Mature: 17845

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLTQHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKH
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEECCHHHHHCCCCHHH
LRRLAALVTELGAVEVVVGLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTT
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAATREAGDG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVLTQHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKH
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEECCHHHHHCCCCHHH
LRRLAALVTELGAVEVVVGLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTT
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAATREAGDG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA