Click here to switch to the map view.

The map label for this gene is ycaJ [C]

Identifier: 41407170

GI number: 41407170

Start: 1126127

End: 1127479

Strand: Direct

Name: ycaJ [C]

Synonym: MAP1072

Alternate gene names: 41407170

Gene position: 1126127-1127479 (Clockwise)

Preceding gene: 41407167

Following gene: 41407171

Centisome position: 23.32

GC content: 73.47

Gene sequence:

>1353_bases
ATGCCTGAAGCCGTGTCCGACGGTCTGTTCGACCTGCCCGGCGCGCCGCCGCCGGGCGACCACGGCCTGGGCGTGCCGGC
CGGTGCGCCGCTGGCGGTCCGGATGCGCCCGGCGTCGCTGGACGAGGTGGTAGGGCAGGACCACCTGCTGGCCCCCGGGT
CGCCGCTGCGCCGCCTGGTGGAGGGCTCGGGCGTGGCGTCGGCCATCCTGTACGGGCCGCCGGGCAGCGGCAAGACCACG
CTGGCCGCGCTGATCTCCCAGGCGACCGGCCGCCGGTTCGAGGCGCTCTCGGCGCTGTCGGCGGGTGTCAAGGACGTGCG
CGCGGTGATCGAGAGCGCGCGCACCGCGCTGTTGCGCGGCGAGCAGACCGTGCTGTTCATCGACGAGGTGCACCGGTTCT
CCAAGACCCAGCAGGACGCCCTGCTGTCCGCGGTGGAGAACCGGGTGGTGCTGCTGGTGGCGGCCACCACGGAGAACCCG
TCCTTCTCGGTGGTGGCGCCGCTGCTGTCCCGGTCGCTGATCTTGCAGCTGCGGCCGCTGAGCGCCGACGACATCCGCAC
CGTGGTGCGCCGCGCGATCGACGACCCGCGCGGCCTGGGCGGGCGGGTCCCGGTCGCGCCCGAGGCCGTCGACCTGCTGG
TGCGGCTGGCCGCAGGCGATGCCCGGCGGGCGCTGACGGCGCTGGAGGTGGCCGCCGAGGCCGGCGAATCGGTCACCGTG
CAGACCGTCGAGCAGTCCCTGGACGAGGCCGCGGTGCGCTACGACCGCGACGGCGACCAGCACTACGACGTGATCAGCGC
CTTCATCAAATCGGTCCGCGGCTCGGACGTGGACGCCGCGCTGCACTATCTGGCCCGCATGCTGGTAGCGGGGGAGGACC
CGCGCTTCATCGCGCGCCGGCTGATGATCCTGGCCAGCGAGGACATCGGCATGGCCGACCCGGCCGCGCTGCAGGTGGCG
GTGGCGGCCGCGCAGACGGTGGCGCTGATCGGCATGCCCGAGGCGCAGCTCACCCTGGCGCACTGCACCGTCTATCTGGC
CACCGCGCCGAAGTCCAACGCGGTCACCACCGCGCTGGGCGCGGCGATGAGCGACATCAAGGCCGGCAAGGCCGGCCTGG
TGCCCGCCCACCTGCGCGACGGACACTATTCGGGTGCGGCGGCGCTGGGCCACGCCCAGGGCTACCAGTACTCCCACGAC
CACCCGGATGGTGTTGTGGCACAACAGTATCCGCCGGACGAGCTGGTCGGTGTGGACTACTACCGGCCCACCGGCCGCGG
CGCCGAGCGGGAGATGGCCGGGCGGCTGGACCGGCTGCGCGCGATCATCCGCAACAAGAGGGGACGGTCATGA

Upstream 100 bases:

>100_bases
GAACGCGCACTGGATTCGGCAAACCGGAACTTAGCAAAGATGACGCCGGCGCGCGCGGGTTGACGGCCGCGGGCCGGCTC
GCGCGTCGCCCCCTCGTGGT

Downstream 100 bases:

>100_bases
AAGTCTTCACCGACGAGGAGATGGGCCGGCTGCTGACCACCGCCAAGCCCTACAGCGTCGTCATCCTCAAGCGCGGCCCC
GGCTTCGGCCACGAGTCAGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MPEAVSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASAILYGPPGSGKTT
LAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENP
SFSVVAPLLSRSLILQLRPLSADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTV
QTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMADPAALQVA
VAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVTTALGAAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHD
HPDGVVAQQYPPDELVGVDYYRPTGRGAEREMAGRLDRLRAIIRNKRGRS

Sequences:

>Translated_450_residues
MPEAVSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASAILYGPPGSGKTT
LAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENP
SFSVVAPLLSRSLILQLRPLSADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTV
QTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMADPAALQVA
VAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVTTALGAAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHD
HPDGVVAQQYPPDELVGVDYYRPTGRGAEREMAGRLDRLRAIIRNKRGRS
>Mature_449_residues
PEAVSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASAILYGPPGSGKTTL
AALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPS
FSVVAPLLSRSLILQLRPLSADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTVQ
TVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMADPAALQVAV
AAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVTTALGAAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHDH
PDGVVAQQYPPDELVGVDYYRPTGRGAEREMAGRLDRLRAIIRNKRGRS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=41.002277904328, Blast_Score=300, Evalue=2e-81,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=38.0410022779043, Blast_Score=259, Evalue=3e-69,
Organism=Homo sapiens, GI31563534, Length=277, Percent_Identity=23.826714801444, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4506491, Length=256, Percent_Identity=25, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI31881687, Length=256, Percent_Identity=25, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=44.2857142857143, Blast_Score=338, Evalue=4e-94,
Organism=Escherichia coli, GI1786676, Length=273, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=38.2978723404255, Blast_Score=275, Evalue=9e-75,
Organism=Saccharomyces cerevisiae, GI6324039, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI18859927, Length=231, Percent_Identity=28.1385281385281, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47349; Mature: 47217

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEAVSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHH
EGSGVASAILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRG
HCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL
CCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHEEEECCC
SADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTV
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEH
QTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH
LMILASEDIGMADPAALQVAVAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVTTALG
HHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCHHHEEEEEEEEEEEECCCCCCHHHHHH
AAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHDHPDGVVAQQYPPDELVGVDY
HHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCC
YRPTGRGAEREMAGRLDRLRAIIRNKRGRS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PEAVSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHH
EGSGVASAILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRG
HCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL
CCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHEEEECCC
SADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTV
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEH
QTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH
LMILASEDIGMADPAALQVAVAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVTTALG
HHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCHHHEEEEEEEEEEEECCCCCCHHHHHH
AAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHDHPDGVVAQQYPPDELVGVDY
HHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCC
YRPTGRGAEREMAGRLDRLRAIIRNKRGRS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]