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The map label for this gene is cspA_2

Identifier: 41406767

GI number: 41406767

Start: 691497

End: 691700

Strand: Direct

Name: cspA_2

Synonym: MAP0669

Alternate gene names: 41406767

Gene position: 691497-691700 (Clockwise)

Preceding gene: 41406766

Following gene: 41406768

Centisome position: 14.32

GC content: 58.33

Gene sequence:

>204_bases
ATGGCACAGGGAACTGTGAAATGGTTCAACGGTGAAAAGGGCTTCGGCTTCATCACCCCTGACGACGGCACGAAGGACCT
CTTCGTCCATTACTCCGAGATCCAGGGAAGCGGCTATCGCTCGCTCGACGAGAACCAGCGTGTTCAGTTCGACGTTGAGC
AGGGAGCCAAGGGACCCCAGGCGGTAGGAGTCAGCACCGTCTGA

Upstream 100 bases:

>100_bases
CAAGTGAGGCAACTGTTTTCAATATATGGTCGGTCTCATGCTACCCTGAACCCGCACGGATGTGATTGGTACATCCGCAT
TTGATGAGAGAAGTAAGTAA

Downstream 100 bases:

>100_bases
GAACGTCACAAACGTCACGGTGGGGCTGGTGCGATTGACTTCGCACCAGCCTCACTGGTTTTTCCGATCGCTGAACGGCC
GGTGGCGACAACACCCGGCG

Product: CspA_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQGAKGPQAVGVSTV

Sequences:

>Translated_67_residues
MAQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQGAKGPQAVGVSTV
>Mature_66_residues
AQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQGAKGPQAVGVSTV

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=65.625, Blast_Score=96, Evalue=5e-22,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=60.9375, Blast_Score=95, Evalue=9e-22,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=61.2903225806452, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=58.4615384615385, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=63.9344262295082, Blast_Score=89, Evalue=8e-20,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=49.2063492063492, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7326; Mature: 7195

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQGAKGPQ
CCCCCEEEECCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
AVGVSTV
CCCEECC
>Mature Secondary Structure 
AQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQGAKGPQ
CCCCEEEECCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
AVGVSTV
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8655472 [H]