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The map label for this gene is ybjK [C]

Identifier: 41406707

GI number: 41406707

Start: 634337

End: 634954

Strand: Direct

Name: ybjK [C]

Synonym: MAP0609

Alternate gene names: 41406707

Gene position: 634337-634954 (Clockwise)

Preceding gene: 41406704

Following gene: 41406709

Centisome position: 13.13

GC content: 72.17

Gene sequence:

>618_bases
GTGACTGCAGCGGTTACTCCAAAAGGAGAACGCCGGCGGTACGCGCTCGTGAGCGCCGCCGCCGAGCTGCTGGCCGAGGG
TGGGTTCGAGGCGGTGCGGCACCGGGCGGTCGCCCGGCGGGCCGGATTGCCGCTGGCATCCACCACCTATTACTTCTCCT
CCCTGGACGACCTGATCGCCCGCGCGGTCGAGCACATCGCCATGATCGAGGTGGCCCAGCTGCGGTCCCGGGTCAGCGCC
TTGTCGCGGCGCCGCCGCGGACCGGAGACCATCGCCGAAGTGCTGGCCGACCTGCTGGTCGGCGACGTCTCCGGCCCGGG
CCTGACCGAGCAGCTGATCTCGCGCTACGAACGGCACATCGCCTGTACCCGGCTGCCCGCGCTGCGCGAGACCATGCGCC
GCAGCCTGCGCCAGCGCGCCGAGGCGGTGGCGGAGGCCATCGAACGCTCGGGCCGCTCGGTGCACATCGACTTGGTGTGC
ACCCTGATCTGCGCCGTGGACGGCTCGGTGGTGTCGGCCCTGGTGGAGGGCCGGGATCCGCGGGCGGCGGCCCAGGGTGC
GGTGGTCGACCTCATCGAGGTGCTGGCCCCGATCGATCAGCGGCCGGTGCAGATCTGA

Upstream 100 bases:

>100_bases
GCTCAAGTCGGGCATGCGGGTCATCATGCCATGTCCGTTCGGCGGGTCGTTTGGTCGAAATGGCAATGCAGTACCACTTT
GGCTGGCACGATGGCTACTC

Downstream 100 bases:

>100_bases
GCGATTGCCGGCGGGCCGCCGGCAGCGACGGCGTCACGATGCAGCCGGTGCCGGGGTCGCCGTAGCTGGTCACCGCGTCC
GGGCGGCGCTGGGCGAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTAAVTPKGERRRYALVSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIAMIEVAQLRSRVSA
LSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHIACTRLPALRETMRRSLRQRAEAVAEAIERSGRSVHIDLVC
TLICAVDGSVVSALVEGRDPRAAAQGAVVDLIEVLAPIDQRPVQI

Sequences:

>Translated_205_residues
MTAAVTPKGERRRYALVSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIAMIEVAQLRSRVSA
LSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHIACTRLPALRETMRRSLRQRAEAVAEAIERSGRSVHIDLVC
TLICAVDGSVVSALVEGRDPRAAAQGAVVDLIEVLAPIDQRPVQI
>Mature_204_residues
TAAVTPKGERRRYALVSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIAMIEVAQLRSRVSAL
SRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHIACTRLPALRETMRRSLRQRAEAVAEAIERSGRSVHIDLVCT
LICAVDGSVVSALVEGRDPRAAAQGAVVDLIEVLAPIDQRPVQI

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22227; Mature: 22096

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAVTPKGERRRYALVSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RAVEHIAMIEVAQLRSRVSALSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHI
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ACTRLPALRETMRRSLRQRAEAVAEAIERSGRSVHIDLVCTLICAVDGSVVSALVEGRDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
RAAAQGAVVDLIEVLAPIDQRPVQI
HHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TAAVTPKGERRRYALVSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA
CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RAVEHIAMIEVAQLRSRVSALSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHI
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ACTRLPALRETMRRSLRQRAEAVAEAIERSGRSVHIDLVCTLICAVDGSVVSALVEGRDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
RAAAQGAVVDLIEVLAPIDQRPVQI
HHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA