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The map label for this gene is yjkA [H]

Identifier: 41406673

GI number: 41406673

Start: 600103

End: 600885

Strand: Direct

Name: yjkA [H]

Synonym: MAP0575

Alternate gene names: 41406673

Gene position: 600103-600885 (Clockwise)

Preceding gene: 41406672

Following gene: 41406674

Centisome position: 12.43

GC content: 73.44

Gene sequence:

>783_bases
ATGAACGGCCAGGTCGGCTGGCTGGGCCTGGCGACGTCGCTGATCCTGGTGGCGTTCGCGGGCGCGATCTCGCTGTGGCG
GCGGTTGGGCCTGGAGCGCCAGCTGCTGTGGGCGGCCTCCCGCGCGTTGGTGCAGCTGCTGCTGGTGGGCGGCGCGCTGA
CGCTGCTGTTCGAGCCGGGCCGGTCGCTGTGGTGGTCGTGGGCCTGGGTCGCGGGGATGGTCGGCTACGCCGGGGACGTG
GCCCGGCGGCGGGCGCCCGAGGTGCCGCGGTTCGCCCCGCTGGCGGTGGCGGCGTTCGCCGCCGCCGCGGTGGTGACGCT
CGGGGTGCTCTTCGGGCTGCGGGTGTTCCCGCTGCAGGGGCGCACCCTGGTGCCGGTGGCCGGGATGATGATCGGCAATT
CGATGACCGCCATGGTTCTGGTGGCCCGGCGGTTGGTCGACGAGCTGCGCGACAAGCGCGACGAGGTCGAGGCCAGGCTG
GCCCTGGGGCAGCCGTCGGGCCAGGCCGCCTCCCCCTACCTGCGGATCGCGTTACGGTCGGCGATATCCCCGCAGATCGA
GACGACCAAGGCCACCGGCCTGGTGTTCCTGCCGGGCGCGATGACCGGGCTCATCCTGGCCGGCGTGCCGCCGCTGCAGG
CGGTGCTGGTGCAGGCCGTGGTGATGTTCTTGATCCTGGGTTCGGTCGCGGCCACCACGGTGGTCGTCGCGCTCGGCATC
GTCCGGCTGGTGTTCACCCGCGACCATCGGCTGCGGCCGCTGGATCAGCGGCCGCCGGATTGA

Upstream 100 bases:

>100_bases
AGGTGACGCGGGCGGCCGACCGGGTGCTGCGGCTGGAGCGCGGCCGCAGCCTGGGGCTCAGCCAAGTCGGCGGCGGGCCC
GACGACGGCGCGGTGCCGCG

Downstream 100 bases:

>100_bases
CCGTCAACCCCGGGGCGTTCCGGTTACACACTGGCCGTAATGTGTAAACAATCCTGAGCCGACGACAAGCGAGGTGGGCG
CAATGACTCTCTCCGAGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNGQVGWLGLATSLILVAFAGAISLWRRLGLERQLLWAASRALVQLLLVGGALTLLFEPGRSLWWSWAWVAGMVGYAGDV
ARRRAPEVPRFAPLAVAAFAAAAVVTLGVLFGLRVFPLQGRTLVPVAGMMIGNSMTAMVLVARRLVDELRDKRDEVEARL
ALGQPSGQAASPYLRIALRSAISPQIETTKATGLVFLPGAMTGLILAGVPPLQAVLVQAVVMFLILGSVAATTVVVALGI
VRLVFTRDHRLRPLDQRPPD

Sequences:

>Translated_260_residues
MNGQVGWLGLATSLILVAFAGAISLWRRLGLERQLLWAASRALVQLLLVGGALTLLFEPGRSLWWSWAWVAGMVGYAGDV
ARRRAPEVPRFAPLAVAAFAAAAVVTLGVLFGLRVFPLQGRTLVPVAGMMIGNSMTAMVLVARRLVDELRDKRDEVEARL
ALGQPSGQAASPYLRIALRSAISPQIETTKATGLVFLPGAMTGLILAGVPPLQAVLVQAVVMFLILGSVAATTVVVALGI
VRLVFTRDHRLRPLDQRPPD
>Mature_260_residues
MNGQVGWLGLATSLILVAFAGAISLWRRLGLERQLLWAASRALVQLLLVGGALTLLFEPGRSLWWSWAWVAGMVGYAGDV
ARRRAPEVPRFAPLAVAAFAAAAVVTLGVLFGLRVFPLQGRTLVPVAGMMIGNSMTAMVLVARRLVDELRDKRDEVEARL
ALGQPSGQAASPYLRIALRSAISPQIETTKATGLVFLPGAMTGLILAGVPPLQAVLVQAVVMFLILGSVAATTVVVALGI
VRLVFTRDHRLRPLDQRPPD

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=255, Percent_Identity=29.4117647058824, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27770; Mature: 27770

Theoretical pI: Translated: 12.06; Mature: 12.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGQVGWLGLATSLILVAFAGAISLWRRLGLERQLLWAASRALVQLLLVGGALTLLFEPG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCC
RSLWWSWAWVAGMVGYAGDVARRRAPEVPRFAPLAVAAFAAAAVVTLGVLFGLRVFPLQG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RTLVPVAGMMIGNSMTAMVLVARRLVDELRDKRDEVEARLALGQPSGQAASPYLRIALRS
CEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AISPQIETTKATGLVFLPGAMTGLILAGVPPLQAVLVQAVVMFLILGSVAATTVVVALGI
HCCCCCCCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRLVFTRDHRLRPLDQRPPD
HHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNGQVGWLGLATSLILVAFAGAISLWRRLGLERQLLWAASRALVQLLLVGGALTLLFEPG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCC
RSLWWSWAWVAGMVGYAGDVARRRAPEVPRFAPLAVAAFAAAAVVTLGVLFGLRVFPLQG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RTLVPVAGMMIGNSMTAMVLVARRLVDELRDKRDEVEARLALGQPSGQAASPYLRIALRS
CEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AISPQIETTKATGLVFLPGAMTGLILAGVPPLQAVLVQAVVMFLILGSVAATTVVVALGI
HCCCCCCCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRLVFTRDHRLRPLDQRPPD
HHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]