| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41406637
Identifier: 41406637
GI number: 41406637
Start: 564394
End: 565383
Strand: Direct
Name: 41406637
Synonym: MAP0539
Alternate gene names: NA
Gene position: 564394-565383 (Clockwise)
Preceding gene: 41406635
Following gene: 41406638
Centisome position: 11.69
GC content: 64.04
Gene sequence:
>990_bases GTGTTGTTCGGCGGGAACGTCTTCGGACTCTTTGGCCTTCAGGTTCTGCGCGACCTCGGCATTCCAGTACTCGTTGGCCC GAGTGGTGTCCACCTCGATCTCGAAGCGCTCCACCATCTCCGGCTCGATGTCGGCGACGTCGACGTAGAACTGCTGGTAC CAGCGGCGCAGCTGGTAGACGGCGCCGTCCTCCTCGACCAGCAGCGGATTGTCGATGCGGGTCTTGTGCTTCCAGATCTC GACGTCCTGCAGGAAGCCCTTGCTGACCCCCTCGGTGAACACCCGGGACAGCTTGTCGGTCATCTCCTCGTCCATGCCCT TGGGCTTCTCCACGATCACGCCCCACTGCAGCACGAACGAGTTCTGCGTCACCGGGTAGTGGCAGTTGATCAGGATCGAC TCGGCCTTGTAGTCGCCGTAGCTGTTGTGCAGCCAGTTGATCATGAACGACGGACCGAAGTAGGACGCCTCCGAATCCAG GTGTGCCTCACCGTAAGACGTGCCGAGGTCGTTCACGTCGGGGCGGCCCACGTTGTGCAGGTACTGCGACGCGATGTGGC CCTCGAACACGTTCTTGAAGTATGTCGGCAACCCGAAATGGATGTAGAAGAAGTGCGCCATGTCGGTGACGTTGTCGATG ATGTCGCGGCAGTTGGAGCCCTCGATGAGGATGCGGTTCCACCGCCAGTCGGTCCACTCGTCGCTGTGCGCCTCCGGGAT CTCCGGGATGCGGACGGCCGGGTCCGGCGGGTTGTTCTCGTGGTCGTGCCAGACGAACAGCAGCCCGCCCCGCACATCGG TGGTCCACGACCGGGTGCGCGCCGTCTTCGGCGTGCGCTTGGCGTACGGCACCAGCTTGCACCGGCCGTCGCCGCCCCAG CGCCAGTCGTGGAACGGGCAGGCGACCTCGTCGCCCTTGATGGTGCCCTCCGACAGGTCACCGCCCATGTGCCGGCAGTA GCCGTCGAGCACGTGGATGTCGCCGTGTGA
Upstream 100 bases:
>100_bases CGCTCGTCGTGGTCGTGATGATCGCCGTGGAGCAACAACATCGACCGAGCGAGTCGATCGACGTCGGGAACCGCCGGCTG ATCGTCGGTCATGGCGGTCA
Downstream 100 bases:
>100_bases GTCGGCGAAGACGACCAGTTTGGTGCCGAACGCCTCGATCGAGTGCGGCTTGCCGTCCTGGAAGTCGTTTGCGACGCCCA GGCAGTGCCAGCCACGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MLFGGNVFGLFGLQVLRDLGIPVLVGPSGVHLDLEALHHLRLDVGDVDVELLVPAAQLVDGAVLLDQQRIVDAGLVLPDL DVLQEALADPLGEHPGQLVGHLLVHALGLLHDHAPLQHERVLRHRVVAVDQDRLGLVVAVAVVQPVDHERRTEVGRLRIQ VCLTVRRAEVVHVGAAHVVQVLRRDVALEHVLEVCRQPEMDVEEVRHVGDVVDDVAAVGALDEDAVPPPVGPLVAVRLRD LRDADGRVRRVVLVVVPDEQQPAPHIGGPRPGARRLRRALGVRHQLAPAVAAPAPVVERAGDLVALDGALRQVTAHVPAV AVEHVDVAV
Sequences:
>Translated_329_residues MLFGGNVFGLFGLQVLRDLGIPVLVGPSGVHLDLEALHHLRLDVGDVDVELLVPAAQLVDGAVLLDQQRIVDAGLVLPDL DVLQEALADPLGEHPGQLVGHLLVHALGLLHDHAPLQHERVLRHRVVAVDQDRLGLVVAVAVVQPVDHERRTEVGRLRIQ VCLTVRRAEVVHVGAAHVVQVLRRDVALEHVLEVCRQPEMDVEEVRHVGDVVDDVAAVGALDEDAVPPPVGPLVAVRLRD LRDADGRVRRVVLVVVPDEQQPAPHIGGPRPGARRLRRALGVRHQLAPAVAAPAPVVERAGDLVALDGALRQVTAHVPAV AVEHVDVAV >Mature_329_residues MLFGGNVFGLFGLQVLRDLGIPVLVGPSGVHLDLEALHHLRLDVGDVDVELLVPAAQLVDGAVLLDQQRIVDAGLVLPDL DVLQEALADPLGEHPGQLVGHLLVHALGLLHDHAPLQHERVLRHRVVAVDQDRLGLVVAVAVVQPVDHERRTEVGRLRIQ VCLTVRRAEVVHVGAAHVVQVLRRDVALEHVLEVCRQPEMDVEEVRHVGDVVDDVAAVGALDEDAVPPPVGPLVAVRLRD LRDADGRVRRVVLVVVPDEQQPAPHIGGPRPGARRLRRALGVRHQLAPAVAAPAPVVERAGDLVALDGALRQVTAHVPAV AVEHVDVAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35297; Mature: 35297
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFGGNVFGLFGLQVLRDLGIPVLVGPSGVHLDLEALHHLRLDVGDVDVELLVPAAQLVD CCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHCCCCCCCHHHCCCHHHHHC GAVLLDQQRIVDAGLVLPDLDVLQEALADPLGEHPGQLVGHLLVHALGLLHDHAPLQHER CHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH VLRHRVVAVDQDRLGLVVAVAVVQPVDHERRTEVGRLRIQVCLTVRRAEVVHVGAAHVVQ HHHHHHHEECCCCHHHHHHHHHHCCCCHHHHHHHHHEEHHHHHHHHHHHHEEECHHHHHH VLRRDVALEHVLEVCRQPEMDVEEVRHVGDVVDDVAAVGALDEDAVPPPVGPLVAVRLRD HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH LRDADGRVRRVVLVVVPDEQQPAPHIGGPRPGARRLRRALGVRHQLAPAVAAPAPVVERA HCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHC GDLVALDGALRQVTAHVPAVAVEHVDVAV CCEEEEHHHHHHHHHHCCHHHHHHHHCCC >Mature Secondary Structure MLFGGNVFGLFGLQVLRDLGIPVLVGPSGVHLDLEALHHLRLDVGDVDVELLVPAAQLVD CCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHCCCCCCCHHHCCCHHHHHC GAVLLDQQRIVDAGLVLPDLDVLQEALADPLGEHPGQLVGHLLVHALGLLHDHAPLQHER CHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH VLRHRVVAVDQDRLGLVVAVAVVQPVDHERRTEVGRLRIQVCLTVRRAEVVHVGAAHVVQ HHHHHHHEECCCCHHHHHHHHHHCCCCHHHHHHHHHEEHHHHHHHHHHHHEEECHHHHHH VLRRDVALEHVLEVCRQPEMDVEEVRHVGDVVDDVAAVGALDEDAVPPPVGPLVAVRLRD HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH LRDADGRVRRVVLVVVPDEQQPAPHIGGPRPGARRLRRALGVRHQLAPAVAAPAPVVERA HCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHC GDLVALDGALRQVTAHVPAVAVEHVDVAV CCEEEEHHHHHHHHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA