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The map label for this gene is yjfH [C]

Identifier: 41406577

GI number: 41406577

Start: 505713

End: 506642

Strand: Direct

Name: yjfH [C]

Synonym: MAP0479

Alternate gene names: 41406577

Gene position: 505713-506642 (Clockwise)

Preceding gene: 41406576

Following gene: 41406578

Centisome position: 10.47

GC content: 73.87

Gene sequence:

>930_bases
ATGGCGGGCAACTCGCGACGCCGCGGCGCGGTACGCAAAGCCGGCACCAAGAAGGGCCCGACCGTGGGTTCAGGGGGCCA
GCGTCGCCGCGGGCTGGAGGGCCGCGGTCCCACGCCGCCCGCGCACCTGCGGCCCAACCACCCCGCCGCCAAGCGCGCCC
AATCGCCGCCCCGCCGCCCCGCCAAGCGCACCGAGGAGACCGAGACGGTGCTGGGCCGCAACCCGGTGCTGGAATGCCTG
CGCGCCGGCGTCCCGGCGACCGCGCTGTATGTGGCGTTGGGCACCGAGGCCGACGAACGGCTCACCGAATCCGTCTCCCG
CGCAGCCGATTCGGGCATCTCGATCCTCGAGGTGCCGCGCGCGGACCTGGACCGGATGACCGGGAACCACCTGCATCAGG
GCATCGCGTTGCAGGTGCCGCCGTATATCTACGCCCACCCCGACGACCTGCTCGAGGCCGCGGCCGGTTCGCTGCCGGCA
CTGCTGGTCGCGCTGGACAACATCTCCGACCCGCGCAACCTGGGCGCCATCGTCCGGTCGGTCGCCGCGTTCGGCGGCCA
CGGTGTGCTGATCCCGCAGCGGCGGTCGGCGTCGGTGACGGCGGTGGCCTGGCGCACCAGCGCCGGGGCCGCCGCCCGCA
TCCCGGTCGCGCGGGCCACCAATCTCACCCGCACACTGCAGGATTGGGCCGACCGCGGGCTGCGGGTGATCGGGCTGGAC
GCCGGCGGGGACACCATGCTCGACGACCTGGATGGCAGCGACCCGCTGGTGGTCGTCGTGGGCTCGGAGGGCAAGGGGCT
GTCCCGGCTGGTGCGGCAGAACTGTGACGAGGTGGTGTCCATCCCGATGGCCGGCAGCGCCGAATCGCTGAACGCCTCGG
TGGCCGCGGGGGTGGTGCTGGCCGAGATCTCCCGGCAGCGCAGGGGTTGA

Upstream 100 bases:

>100_bases
GCTCGCCGACGAGATCCGAAACCGGCTCAAGCAGGCCGGCATCGAGGTCACCGACACCGCCGACGGGCCGCAGTGGACGT
TGGGCGGAGACGGCAAGTAG

Downstream 100 bases:

>100_bases
GTTCCCTGGGCTCGCGGTGGGCGGCGGCGGTGGCGCTGCTGATGGCGGTGCTGCTGTCGGCGGCGCCGGTGTATGGGCAG
CCGGCGACCTTTGATCTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MAGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRPAKRTEETETVLGRNPVLECL
RAGVPATALYVALGTEADERLTESVSRAADSGISILEVPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPA
LLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD
AGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQRRG

Sequences:

>Translated_309_residues
MAGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRPAKRTEETETVLGRNPVLECL
RAGVPATALYVALGTEADERLTESVSRAADSGISILEVPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPA
LLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD
AGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQRRG
>Mature_308_residues
AGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRPAKRTEETETVLGRNPVLECLR
AGVPATALYVALGTEADERLTESVSRAADSGISILEVPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPAL
LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLDA
GGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQRRG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family

Homologues:

Organism=Homo sapiens, GI40068479, Length=266, Percent_Identity=32.3308270676692, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1790623, Length=242, Percent_Identity=37.1900826446281, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788935, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790083, Length=163, Percent_Identity=25.7668711656442, Blast_Score=65, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17555908, Length=297, Percent_Identity=30.976430976431, Blast_Score=95, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y479_MYCPA (Q743W2)

Other databases:

- EMBL:   AE016958
- RefSeq:   NP_959413.1
- HSSP:   P63177
- ProteinModelPortal:   Q743W2
- SMR:   Q743W2
- EnsemblBacteria:   EBMYCT00000039759
- GeneID:   2721745
- GenomeReviews:   AE016958_GR
- KEGG:   mpa:MAP0479
- NMPDR:   fig|262316.1.peg.479
- GeneTree:   EBGT00050000015604
- HOGENOM:   HBG714057
- OMA:   MTASAWK
- ProtClustDB:   CLSK763326
- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123
- SMART:   SM00967
- TIGRFAMs:   TIGR00186

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind

EC number: 2.1.1.- [C]

Molecular weight: Translated: 32331; Mature: 32200

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: BINDING 261-261 BINDING 281-281 BINDING 290-290

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRP
CCCCCCCCCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
AKRTEETETVLGRNPVLECLRAGVPATALYVALGTEADERLTESVSRAADSGISILEVPR
HHHHHHHHHHHCCCHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHCCCEEEECCC
ADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPALLVALDNISDPRNLGAIVRS
HHHHHHCHHHHHCCEEEECCCEEEECHHHHHHHHCCCHHEEEHHHHCCCCHHHHHHHHHH
VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD
HHHHCCCEEEEECCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEEEC
AGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVL
CCCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHCHHHHEECCCCCCHHHCCHHHHHHHHH
AEISRQRRG
HHHHHHHCC
>Mature Secondary Structure 
AGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRP
CCCCCCCCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
AKRTEETETVLGRNPVLECLRAGVPATALYVALGTEADERLTESVSRAADSGISILEVPR
HHHHHHHHHHHCCCHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHCCCEEEECCC
ADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPALLVALDNISDPRNLGAIVRS
HHHHHHCHHHHHCCEEEECCCEEEECHHHHHHHHCCCHHEEEHHHHCCCCHHHHHHHHHH
VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD
HHHHCCCEEEEECCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEEEC
AGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVL
CCCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHCHHHHEECCCCCCHHHCCHHHHHHHHH
AEISRQRRG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA