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The map label for this gene is dppA

Identifier: 41406507

GI number: 41406507

Start: 432346

End: 433971

Strand: Direct

Name: dppA

Synonym: MAP0409

Alternate gene names: 41406507

Gene position: 432346-433971 (Clockwise)

Preceding gene: 41406506

Following gene: 41406508

Centisome position: 8.95

GC content: 68.94

Gene sequence:

>1626_bases
ATGCGTGGGATGCGGACCCCGGTGGCCGTGCTGGCCACGGCCGCCGCCGCGCTGCTCGTGGTCGCCTCGCTGGCCGGTTG
CGGCGGCGGGGTGCTGAGCCCGGACCTGGTGGTGGTCAACGGCGGCGAACCACCGAACCCACTCGTTCCCACCGGCACCA
ACGACAGCCAGGGCGGCCGCATCCTGGATCGACTCTTCGCCGGGCTGATGTCCTACGACGCCGCCGGCAACCCCGCACCC
GAGGTGGCCCAGTCGATCGAGAGCGGCGACAACGTCAACTATCGCATCGTCTTGAAACCCGGCTGGAGGTTCACCGACGG
CTCGCCGGTGACGGCCCATTCCTTCGTCGACGCCTGGAACTACGGGGCGCTGAGCACCAATGCCCAACTGCAGCAAAGCT
TTTTCAGCCCGATCGACGGGTACGACGCGCTGGCCGCCGGGCAGCCGCAGCAGACCACCATGACCGGGCTGCGGGTGGTC
AACGACCTGGAGTTCACCGTCCGGCTCAAGGCCCCGACCGTGGACTTCAAACTGCGGCTTGGCCACAGCGCGTTTTATCC
CCTGCCGCAGGCCGCCTTTCGCGACATGGCCGCATTCGGGCGGCACCCGATCGGCAACGGCCCGTACCAGCTCGCCGGCG
GCCCCGACGGCCCGGCGTGGGAGCACAACGTGCGAATCGACCTGCGGCCCAACCCCGATTACCACGGCAACCGCAAGCCC
CGCAACAAGGGGCTGAGGTTCGAGTTCTACGCCAACCTGGACACCGCCTACGCCGATCTGCTCTCCGGCAACCTCGATGT
GCTCGACACCATCCCGCCCAGCGCCCTGCCGGTCTACCGGCGCGACCTGGGGGACAGGGTCACCGCCGGGCCGGCCGCGA
TCAACCAGAGCCTCGACACCCCGCTGCGGCTGCCGCACTTCGGCGGCGAGGAGGGCCGGCTGCGCCGCCTGGCGCTGTCG
GCGGCCATCAACCGGGCGCAGATCTGTCGGCAGATCTTTGCCGACACCCGCAGTCCGGCACGCGATTTCACCGCCCGGTC
GCTGCCCGGCTTCGACCCGAACATCGCCGGAAGCGACGCATTGGACTTCGACCCCGACCGGGCCCGCCGGCTCTGGGCGC
AGGCCGACGCGATCTCGGCGTGGAGCGGCAGCTATCCGATCGCCTACAACGCCGATGCGGGACACCAGGATTGGGTGGAC
GCCGTCGCCAACGGCATCAAGAACGTGCTGGGCATCGATGCGCTCGGCGCGCCGCAGCCCACCTTCGCGGGTTTTCGAAC
CCAGATCACCAACCGCAGCATCGGCTCCGCGTTCCGCTCCGGCTGGCAGGGCGACTACCCGTCCATGATCGAATTTTTGG
CCCCGCTGTTCGCCACCGGCGCCGGGTCCAACGACGTCGGCTATTCCAGCCCGCGGTTCGACGCCGCGCTGGCAACCGCG
GAGGCCGCGCCCGACCTGCCGCAGGCAGCAGCGCTGGCCAACGACGCGCAGCGAATTCTCTTCCACGACATGCCCGTTGT
TCCGCTGTGGAACTACATCAGTGTGGTCGGATGGTCGGCGGAAGTCAGCCACGTGACGGTCACCTGGAACGGGCTGCCCG
ACTACGAGAACATCGTCAAGGCTTGA

Upstream 100 bases:

>100_bases
GATCACCGCGGTCTGAACGACGTCCGTCGCCTCTGGTCGGGCAGTAGACCCGCGCGGGCACTTCACCGCCGCGCCGCTTC
ACGCCCTAGGGTCGGGTGTC

Downstream 100 bases:

>100_bases
CATGGGTTGGTACATCGCACGCCGGATCGCCGTCATGGTGCCCGTATTTCTGGGGGCCACCCTGCTGATCTACGCCATGG
TTTTCCTGCTGCCCGGCGAC

Product: hypothetical protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MRGMRTPVAVLATAAAALLVVASLAGCGGGVLSPDLVVVNGGEPPNPLVPTGTNDSQGGRILDRLFAGLMSYDAAGNPAP
EVAQSIESGDNVNYRIVLKPGWRFTDGSPVTAHSFVDAWNYGALSTNAQLQQSFFSPIDGYDALAAGQPQQTTMTGLRVV
NDLEFTVRLKAPTVDFKLRLGHSAFYPLPQAAFRDMAAFGRHPIGNGPYQLAGGPDGPAWEHNVRIDLRPNPDYHGNRKP
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALPVYRRDLGDRVTAGPAAINQSLDTPLRLPHFGGEEGRLRRLALS
AAINRAQICRQIFADTRSPARDFTARSLPGFDPNIAGSDALDFDPDRARRLWAQADAISAWSGSYPIAYNADAGHQDWVD
AVANGIKNVLGIDALGAPQPTFAGFRTQITNRSIGSAFRSGWQGDYPSMIEFLAPLFATGAGSNDVGYSSPRFDAALATA
EAAPDLPQAAALANDAQRILFHDMPVVPLWNYISVVGWSAEVSHVTVTWNGLPDYENIVKA

Sequences:

>Translated_541_residues
MRGMRTPVAVLATAAAALLVVASLAGCGGGVLSPDLVVVNGGEPPNPLVPTGTNDSQGGRILDRLFAGLMSYDAAGNPAP
EVAQSIESGDNVNYRIVLKPGWRFTDGSPVTAHSFVDAWNYGALSTNAQLQQSFFSPIDGYDALAAGQPQQTTMTGLRVV
NDLEFTVRLKAPTVDFKLRLGHSAFYPLPQAAFRDMAAFGRHPIGNGPYQLAGGPDGPAWEHNVRIDLRPNPDYHGNRKP
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALPVYRRDLGDRVTAGPAAINQSLDTPLRLPHFGGEEGRLRRLALS
AAINRAQICRQIFADTRSPARDFTARSLPGFDPNIAGSDALDFDPDRARRLWAQADAISAWSGSYPIAYNADAGHQDWVD
AVANGIKNVLGIDALGAPQPTFAGFRTQITNRSIGSAFRSGWQGDYPSMIEFLAPLFATGAGSNDVGYSSPRFDAALATA
EAAPDLPQAAALANDAQRILFHDMPVVPLWNYISVVGWSAEVSHVTVTWNGLPDYENIVKA
>Mature_541_residues
MRGMRTPVAVLATAAAALLVVASLAGCGGGVLSPDLVVVNGGEPPNPLVPTGTNDSQGGRILDRLFAGLMSYDAAGNPAP
EVAQSIESGDNVNYRIVLKPGWRFTDGSPVTAHSFVDAWNYGALSTNAQLQQSFFSPIDGYDALAAGQPQQTTMTGLRVV
NDLEFTVRLKAPTVDFKLRLGHSAFYPLPQAAFRDMAAFGRHPIGNGPYQLAGGPDGPAWEHNVRIDLRPNPDYHGNRKP
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALPVYRRDLGDRVTAGPAAINQSLDTPLRLPHFGGEEGRLRRLALS
AAINRAQICRQIFADTRSPARDFTARSLPGFDPNIAGSDALDFDPDRARRLWAQADAISAWSGSYPIAYNADAGHQDWVD
AVANGIKNVLGIDALGAPQPTFAGFRTQITNRSIGSAFRSGWQGDYPSMIEFLAPLFATGAGSNDVGYSSPRFDAALATA
EAAPDLPQAAALANDAQRILFHDMPVVPLWNYISVVGWSAEVSHVTVTWNGLPDYENIVKA

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=516, Percent_Identity=25.1937984496124, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081878, Length=476, Percent_Identity=25.6302521008403, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789397, Length=506, Percent_Identity=24.1106719367589, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787052, Length=516, Percent_Identity=21.3178294573643, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57935; Mature: 57935

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGMRTPVAVLATAAAALLVVASLAGCGGGVLSPDLVVVNGGEPPNPLVPTGTNDSQGGR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHH
ILDRLFAGLMSYDAAGNPAPEVAQSIESGDNVNYRIVLKPGWRFTDGSPVTAHSFVDAWN
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHC
YGALSTNAQLQQSFFSPIDGYDALAAGQPQQTTMTGLRVVNDLEFTVRLKAPTVDFKLRL
CCCCCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHEECCEEEEEEECCCEEEEEEE
GHSAFYPLPQAAFRDMAAFGRHPIGNGPYQLAGGPDGPAWEHNVRIDLRPNPDYHGNRKP
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALPVYRRDLGDRVTAGPAAINQSLDT
CCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCHHHHHHCCCCCCCCHHHHHHCCCC
PLRLPHFGGEEGRLRRLALSAAINRAQICRQIFADTRSPARDFTARSLPGFDPNIAGSDA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
LDFDPDRARRLWAQADAISAWSGSYPIAYNADAGHQDWVDAVANGIKNVLGIDALGAPQP
CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TFAGFRTQITNRSIGSAFRSGWQGDYPSMIEFLAPLFATGAGSNDVGYSSPRFDAALATA
CHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
EAAPDLPQAAALANDAQRILFHDMPVVPLWNYISVVGWSAEVSHVTVTWNGLPDYENIVK
HCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHC
A
C
>Mature Secondary Structure
MRGMRTPVAVLATAAAALLVVASLAGCGGGVLSPDLVVVNGGEPPNPLVPTGTNDSQGGR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHH
ILDRLFAGLMSYDAAGNPAPEVAQSIESGDNVNYRIVLKPGWRFTDGSPVTAHSFVDAWN
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHC
YGALSTNAQLQQSFFSPIDGYDALAAGQPQQTTMTGLRVVNDLEFTVRLKAPTVDFKLRL
CCCCCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHEECCEEEEEEECCCEEEEEEE
GHSAFYPLPQAAFRDMAAFGRHPIGNGPYQLAGGPDGPAWEHNVRIDLRPNPDYHGNRKP
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC
RNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALPVYRRDLGDRVTAGPAAINQSLDT
CCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCHHHHHHCCCCCCCCHHHHHHCCCC
PLRLPHFGGEEGRLRRLALSAAINRAQICRQIFADTRSPARDFTARSLPGFDPNIAGSDA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
LDFDPDRARRLWAQADAISAWSGSYPIAYNADAGHQDWVDAVANGIKNVLGIDALGAPQP
CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TFAGFRTQITNRSIGSAFRSGWQGDYPSMIEFLAPLFATGAGSNDVGYSSPRFDAALATA
CHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
EAAPDLPQAAALANDAQRILFHDMPVVPLWNYISVVGWSAEVSHVTVTWNGLPDYENIVK
HCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]