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The map label for this gene is 41406396

Identifier: 41406396

GI number: 41406396

Start: 317796

End: 319304

Strand: Direct

Name: 41406396

Synonym: MAP0298

Alternate gene names: NA

Gene position: 317796-319304 (Clockwise)

Preceding gene: 41406391

Following gene: 41406398

Centisome position: 6.58

GC content: 66.87

Gene sequence:

>1509_bases
ATGCGCTGTAAGAGCGTAATTTTGCGTCCTTGCCCGACTGTGTTTGCGAACTTTGTGAAAGGCGCTGGGCGTAGGGTGGT
GCGGGTGGCGAAGACGTTCGCCGGGGCGCGGCTGCGGCGATTGCGCGAGGAGCAGGGGCTGACCCAGGTGGCGCTGGCGC
GCGCCCTGGGGCTGTCGACCAGTTACGTCAACCAGCTGGAAAACGACCAGCGCCCGATCACCGTCCCGGTGCTGCTCACC
CTCACCGAGCGTTTCGATCTGCCCACCCAGTACTTCGCGCCGGACTCCGACGCCCGCCTGATCGCCGACCTGCGGGAGGT
GCTCGCCGAAACGCCCGCGACGCCCGGGCAGGTCGAGGAGTTGGTCGCGCGCATGCCGGCGATCGGTCAGACCCTGGTCA
ATCTGCACCGGCGGCTGCACGACACCACCGCCGATCTCGAAGCCCTGTACAGCCGCGCCAATCTGGACATCTCGGACACG
CCGGGGCTACCGCATCAGCCGATGCCGTTCGAGGAGGTGCGGGACTTCTTCTACGACCGCAAGAACTACATCGGCGAGCT
GGACGTGGCCGCCGAGGAAATGTTCGACCACAACCGGTTGCGAATCGGCGGGCTCGACGGCCAGCTCGCCCGGCTGCTCG
GCGAGCAGCTGGGTGTGGCGGTGGTGATCGACGACGGCCAGCTACTGGCCCCGAACTCCAAGCGCCTGTTCGATCCCGAG
TCGAAAACGGTGTACCTGGCCCGCTGGCTGCACCCCGGTCAGCGTGCCTTTCAATTGGCCACCCAGATCGCCCTGCTCAC
CCAGCCGGAATTGATCACCGCGATCATCGCCGGCGACGATCAGCTCAGCGACGATGCCCGCGGTGTGGCCCGCATCGGGC
TGGCCAACTATTTCGCCGGCGCCCTGCTGTTGCCCTACCGCAGATTCCTCGACGCGGCCGAGCGCGTCCGTTACGACATC
GACCAGCTGTCAAGGAGATTCGAGGTGGGCTTCGAAACCGTCTGCCATCGGCTGTCCACGCTGCAACGCCCGAACGCCCG
CGGGGTGCCGTTCATCTTCGTGCGCACCGACAGCGCCGGCAACATCTCGAAACGCCAGTCCGCCACCGCTTTTCACTTCT
CCCGGGTCGGCGGGAACTGTCCGTTGTGGGTGGTGCACCACGCGTTTTCCCGGCCCGGCCAGTTTTTGACCCAGGTCGCG
CAGATGCCCGACGATCGCACCTATTTTTGGATCGCCCGCACCACCAGCGGCGGGCCGAGCCGTTACCTCGGCCCGCACAA
GAGCTTCGCCATCGGGCTGGGTTGCGACGTGGACCACGCGGACAAACTGATTTACTCCGTCGGCATCGATCTGCGCGACA
CCGAGTCGATCGTGCCGATCGGCGCCGGGTGCAAGATCTGCGATCGGGCGGCCTGCCCGCAACGCGCCTTCCCCTACCTC
GGCCGCCCGGTCTCCGTCGACCCGCACCGCAGCACCGACCTGCCCTACCCGCCCGCGATCACGCCCTGA

Upstream 100 bases:

>100_bases
GCCAGGTGCTCGCTGCGGGGGAAATCCTCGGCGCTGCGCCGGGTTCGAACGTCGTGGATGCGCATAAACCGCACCCTACG
CACCCGGCTGAATACGGTAA

Downstream 100 bases:

>100_bases
GCCCGGTCAGGTCGGGCCGCCCGCCCAGGCGCTGAACCGTGGCCCCGGCGGCCGCGGCCGCCCGCCGACCCGCCTCCCGC
GGTGCGGCGCCGTCCCGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MRCKSVILRPCPTVFANFVKGAGRRVVRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLT
LTERFDLPTQYFAPDSDARLIADLREVLAETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTADLEALYSRANLDISDT
PGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGLDGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPE
SKTVYLARWLHPGQRAFQLATQIALLTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDI
DQLSRRFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVVHHAFSRPGQFLTQVA
QMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIYSVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYL
GRPVSVDPHRSTDLPYPPAITP

Sequences:

>Translated_502_residues
MRCKSVILRPCPTVFANFVKGAGRRVVRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLT
LTERFDLPTQYFAPDSDARLIADLREVLAETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTADLEALYSRANLDISDT
PGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGLDGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPE
SKTVYLARWLHPGQRAFQLATQIALLTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDI
DQLSRRFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVVHHAFSRPGQFLTQVA
QMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIYSVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYL
GRPVSVDPHRSTDLPYPPAITP
>Mature_502_residues
MRCKSVILRPCPTVFANFVKGAGRRVVRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLT
LTERFDLPTQYFAPDSDARLIADLREVLAETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTADLEALYSRANLDISDT
PGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGLDGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPE
SKTVYLARWLHPGQRAFQLATQIALLTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDI
DQLSRRFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVVHHAFSRPGQFLTQVA
QMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIYSVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYL
GRPVSVDPHRSTDLPYPPAITP

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 55821; Mature: 55821

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCKSVILRPCPTVFANFVKGAGRRVVRVAKTFAGARLRRLREEQGLTQVALARALGLST
CCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
SYVNQLENDQRPITVPVLLTLTERFDLPTQYFAPDSDARLIADLREVLAETPATPGQVEE
HHHHHHCCCCCCEEEEHEEEEHHHCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
LVARMPAIGQTLVNLHRRLHDTTADLEALYSRANLDISDTPGLPHQPMPFEEVRDFFYDR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KNYIGELDVAAEEMFDHNRLRIGGLDGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPE
HHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEECCCEEECCCCCCCCCCC
SKTVYLARWLHPGQRAFQLATQIALLTQPELITAIIAGDDQLSDDARGVARIGLANYFAG
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
ALLLPYRRFLDAAERVRYDIDQLSRRFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
NISKRQSATAFHFSRVGGNCPLWVVHHAFSRPGQFLTQVAQMPDDRTYFWIARTTSGGPS
CCHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCC
RYLGPHKSFAIGLGCDVDHADKLIYSVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYL
CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCC
GRPVSVDPHRSTDLPYPPAITP
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRCKSVILRPCPTVFANFVKGAGRRVVRVAKTFAGARLRRLREEQGLTQVALARALGLST
CCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
SYVNQLENDQRPITVPVLLTLTERFDLPTQYFAPDSDARLIADLREVLAETPATPGQVEE
HHHHHHCCCCCCEEEEHEEEEHHHCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
LVARMPAIGQTLVNLHRRLHDTTADLEALYSRANLDISDTPGLPHQPMPFEEVRDFFYDR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KNYIGELDVAAEEMFDHNRLRIGGLDGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPE
HHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEECCCEEECCCCCCCCCCC
SKTVYLARWLHPGQRAFQLATQIALLTQPELITAIIAGDDQLSDDARGVARIGLANYFAG
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
ALLLPYRRFLDAAERVRYDIDQLSRRFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
NISKRQSATAFHFSRVGGNCPLWVVHHAFSRPGQFLTQVAQMPDDRTYFWIARTTSGGPS
CCHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCC
RYLGPHKSFAIGLGCDVDHADKLIYSVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYL
CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCC
GRPVSVDPHRSTDLPYPPAITP
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]