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The map label for this gene is csd [H]

Identifier: 41406342

GI number: 41406342

Start: 265500

End: 266696

Strand: Direct

Name: csd [H]

Synonym: MAP0244

Alternate gene names: 41406342

Gene position: 265500-266696 (Clockwise)

Preceding gene: 41406328

Following gene: 41406348

Centisome position: 5.5

GC content: 71.26

Gene sequence:

>1197_bases
ATGGCATACGACGTCGCCCGGGTGCGCGGACTGCATCCGTCGCTGGGTGACGGGTGGGTGCACTTCGACGCCCCGGCCGG
GATGCTGATCCCCGACTCCGTCGCGACCACCGTGTCGACGGCTTTCCGCAGGTCCGGGCCCACCACCGTGGGGGCGCACC
CGTCGGCACAGCGCAGCGCCGCCATCTTGGAGGCGGCCCGGGCGGCGGTGGCCGACCTGTTCAACGCCGAACCCGCGGGC
GTGGTGCTGGGCGCCGACCGGGCGATCCTGTTGTCGGCGCTGGCCGAGGCCTCGTCGTCGCGGGCCGGGCTGGGCTACGA
AGTGATCGTCAGCCGCCTCGACGACGAAGCCAACATCGCGCCCTGGCTGCGGGCGGCGCACCGGTACGGCGCCAAGGTCA
AGTGGGCCGAGATCGACATCGAGACCGGTGAGCTGCCGACCTGGCAGTGGGAGGGGCTGATCGGCAAGTCCACCCGGCTG
GTGGCCGTCGCGTCGGCGTCGGCCACGCTGGGCACCGTCACCGACCTGCGGGCGATGACGAAGCTGGTGCACGACGTCGG
CGGGCTGGTGGTGGTCGACCATTCCGCCGCGGCGCCCTACCGGCTGCTCGACGTGAAGGAGACCGACGCCGACGTGGTGG
CGGTGAACGCCGCCGCGTGGGGCGGCCCGCCGATCGGGGCGATGGTGTTCCGCGACCCGGCGCTGCTGAATTCGTTCAGT
TCCATCTCGGCCGACCCCAAAGCGACCGGCGCGGCCCGGCTGGAGATCGGTGCACACCAGTTCGGCCTGCTCGCCGGGGT
GGTGGCCAGCATCGAGTACCTGGCCTCGCTGGACGAATCCGCGCGCGGCACCCGGCGCGAACGTCTGGCGGTGTCCATGC
AGTCGGCCACCTCGTATCTGAATCGCATCTATGACTACCTGATGGTGTCGCTGCGCTCGCTGCCGCTGGTGATGGTGATC
GGGCGCCCGGAGGTGCGCATCCCGGTGGTCAGCTTCGCCTTGCACGGCGTGCCCGCCGAACGCGTCGTACAACGGTTGGC
GGACAACGGAATTCTGGCCGTCACCAACGAGAGTTCCCGCGCGCTGGACGTGCTGGGCGTCAACGACGTCGGCGGCGCGG
TCACGGTGGGGCTGGCGCACTACTCGACGACGGCCGAGGTCGACCAGTTGGTGCGCGCGCTGGCGTCGCTGGGCTGA

Upstream 100 bases:

>100_bases
CGGGTGCCCTGGCTCGGGAGGCCACCGACTGGCCGGAACGTGTGTGGCACCCGCTACCGTCACAGTTTCGCGGAAAAGCG
GAAGCTTTAAGGTGGCCTGC

Downstream 100 bases:

>100_bases
ACCGTCAGACGGTCAGCACGATCTTCCCGGTGACCTCCGAGGCGACCAGCCGTCGGTGCGCGTCGCCGGCCTGCTGGATG
GGCAGCCGGGCGCCGATGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MAYDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGPTTVGAHPSAQRSAAILEAARAAVADLFNAEPAG
VVLGADRAILLSALAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEIDIETGELPTWQWEGLIGKSTRL
VAVASASATLGTVTDLRAMTKLVHDVGGLVVVDHSAAAPYRLLDVKETDADVVAVNAAAWGGPPIGAMVFRDPALLNSFS
SISADPKATGAARLEIGAHQFGLLAGVVASIEYLASLDESARGTRRERLAVSMQSATSYLNRIYDYLMVSLRSLPLVMVI
GRPEVRIPVVSFALHGVPAERVVQRLADNGILAVTNESSRALDVLGVNDVGGAVTVGLAHYSTTAEVDQLVRALASLG

Sequences:

>Translated_398_residues
MAYDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGPTTVGAHPSAQRSAAILEAARAAVADLFNAEPAG
VVLGADRAILLSALAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEIDIETGELPTWQWEGLIGKSTRL
VAVASASATLGTVTDLRAMTKLVHDVGGLVVVDHSAAAPYRLLDVKETDADVVAVNAAAWGGPPIGAMVFRDPALLNSFS
SISADPKATGAARLEIGAHQFGLLAGVVASIEYLASLDESARGTRRERLAVSMQSATSYLNRIYDYLMVSLRSLPLVMVI
GRPEVRIPVVSFALHGVPAERVVQRLADNGILAVTNESSRALDVLGVNDVGGAVTVGLAHYSTTAEVDQLVRALASLG
>Mature_397_residues
AYDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGPTTVGAHPSAQRSAAILEAARAAVADLFNAEPAGV
VLGADRAILLSALAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEIDIETGELPTWQWEGLIGKSTRLV
AVASASATLGTVTDLRAMTKLVHDVGGLVVVDHSAAAPYRLLDVKETDADVVAVNAAAWGGPPIGAMVFRDPALLNSFSS
ISADPKATGAARLEIGAHQFGLLAGVVASIEYLASLDESARGTRRERLAVSMQSATSYLNRIYDYLMVSLRSLPLVMVIG
RPEVRIPVVSFALHGVPAERVVQRLADNGILAVTNESSRALDVLGVNDVGGAVTVGLAHYSTTAEVDQLVRALASLG

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=425, Percent_Identity=26.5882352941176, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789175, Length=415, Percent_Identity=27.4698795180723, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 41682; Mature: 41551

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGPTTVGAHPSAQRSA
CCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
AILEAARAAVADLFNAEPAGVVLGADRAILLSALAEASSSRAGLGYEVIVSRLDDEANIA
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHH
PWLRAAHRYGAKVKWAEIDIETGELPTWQWEGLIGKSTRLVAVASASATLGTVTDLRAMT
HHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHH
KLVHDVGGLVVVDHSAAAPYRLLDVKETDADVVAVNAAAWGGPPIGAMVFRDPALLNSFS
HHHHHCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCHHHHHHHH
SISADPKATGAARLEIGAHQFGLLAGVVASIEYLASLDESARGTRRERLAVSMQSATSYL
HCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHH
NRIYDYLMVSLRSLPLVMVIGRPEVRIPVVSFALHGVPAERVVQRLADNGILAVTNESSR
HHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCC
ALDVLGVNDVGGAVTVGLAHYSTTAEVDQLVRALASLG
EEEEEECCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AYDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGPTTVGAHPSAQRSA
CCCCHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
AILEAARAAVADLFNAEPAGVVLGADRAILLSALAEASSSRAGLGYEVIVSRLDDEANIA
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHH
PWLRAAHRYGAKVKWAEIDIETGELPTWQWEGLIGKSTRLVAVASASATLGTVTDLRAMT
HHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHH
KLVHDVGGLVVVDHSAAAPYRLLDVKETDADVVAVNAAAWGGPPIGAMVFRDPALLNSFS
HHHHHCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCHHHHHHHH
SISADPKATGAARLEIGAHQFGLLAGVVASIEYLASLDESARGTRRERLAVSMQSATSYL
HCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHH
NRIYDYLMVSLRSLPLVMVIGRPEVRIPVVSFALHGVPAERVVQRLADNGILAVTNESSR
HHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCC
ALDVLGVNDVGGAVTVGLAHYSTTAEVDQLVRALASLG
EEEEEECCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]