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The map label for this gene is recF

Identifier: 41406101

GI number: 41406101

Start: 3300

End: 4457

Strand: Direct

Name: recF

Synonym: MAP0003

Alternate gene names: 41406101

Gene position: 3300-4457 (Clockwise)

Preceding gene: 41406100

Following gene: 41406102

Centisome position: 0.07

GC content: 70.9

Gene sequence:

>1158_bases
GTGTACGTCCGGCATTTAGGACTGCGCGACTTCCGGTCCTGGGCACACGCCGACCTCGAACTGCAGCCGGGTCGGACGGT
CTTCATCGGGTCCAACGGCTTCGGGAAGACGAATCTGCTTGAGGCGCTGTGGTATTCGAGCACGCTGGGGTCACACCGGG
TGGGCACGGACGCGCCGTTGATCCGCGCCGGCGCCGACCGGGCGGTGGTGTCGACCATCGTGGTCAACGACGGCCGGGAA
TGTGCGGTCGATCTGGAGATCGCCGCCGGCCGGGCGAACAAGGCGCGGCTGAACCGGTCACCCGTGCGCAGCACCCGCGA
GGTGCTCGGCGTGCTGCGCGCGGTGCTGTTCGCCCCCGAGGACCTGGCCCTGGTGCGCGGGGATCCCTCCGAGCGGCGCC
GTTACCTCGACGACCTGGCGACGCTGCGGCGCCCGGCGATCGCCGCGGTGCGCGCCGACTACGACAAGGTGTTGCGGCAG
CGCACCGCGTTGCTCAAATCGCTGTCCGGTGCCCGCCACCGGGGCGACCGCGGCGCTCTGGACACCCTCGACGTGTGGGA
CAGCCGGCTGGCCGAATACGGGGCCCAATTGATGGCTGCCCGAATCGATTTGGTGAACCAGTTGGCGCCGGAGGTGGAGA
AGGCCTATCAGCTGCTGGCCCCGGGATCGCGGGCGGCGTCGATCGGCTACCGATCCAGCCTGGGCGCGGCGGCCTCGGCC
GAGGTGAACGCCGGCGACCGCGACTATCTGGAGGCCGCGCTGCTGGCCGGGTTGGCGGCCCACCGGGACGCCGAACTGGA
ACGGGGCATGTGCCTGGTCGGCCCGCACCGCGACGACCTGGAGCTGTGGCTCGGTGAGCAGGTGGCGAAAGGCTTTGCCA
GCCATGGGGAATCGTGGTCGCTGGCGCTGTCCCTGCGGCTGGCCGCCTTCGAGTTGCTGCGGGCCGACGAAAGCGATCCG
GTGTTGCTGCTCGACGACGTGTTCGCCGAGCTCGACGCCGCCCGCCGCCGGGCACTGGCCGCGGTGGCCGAATCCGCCGA
ACAGGTGTTGGTCACCGCGGCGGTGCTCGAAGACATCCCGACGGGCTGGCAGGCTCGGCGGCTCTTCGTCGAGTTGCGCG
ACACCGACGCGGGCCGGGTATCGGAGCTGCGCCCATGA

Upstream 100 bases:

>100_bases
GGCGTCCGACGACGACAGCCCGCCGAGCGGCAGCGGGCCGTTCAGCGCGCTGCCCACCGATTACGTCTACCTGCTGATGC
CCGTGCGGTTGCCAGGCTAG

Downstream 100 bases:

>100_bases
GCGACGACCAGTCCCCCTCCCCCTCGGGAGAACCGACCGCGATGGACCTGGTGCGGCGGACCCTCGAGGAGGCCCGGGCC
GCGGCCCGGGCACAGGGAAA

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIRAGADRAVVSTIVVNDGRE
CAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQ
RTALLKSLSGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA
EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWSLALSLRLAAFELLRADESDP
VLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIPTGWQARRLFVELRDTDAGRVSELRP

Sequences:

>Translated_385_residues
MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIRAGADRAVVSTIVVNDGRE
CAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQ
RTALLKSLSGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA
EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWSLALSLRLAAFELLRADESDP
VLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIPTGWQARRLFVELRDTDAGRVSELRP
>Mature_385_residues
MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIRAGADRAVVSTIVVNDGRE
CAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQ
RTALLKSLSGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA
EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWSLALSLRLAAFELLRADESDP
VLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIPTGWQARRLFVELRDTDAGRVSELRP

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=377, Percent_Identity=27.0557029177719, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 41956; Mature: 41956

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL
CCEECCCHHHHHHHHCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
IRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE
EECCCCHHEEEEEEECCCCCEEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCC
DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHCCCCCCCC
EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWS
CCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
LALSLRLAAFELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP
EEHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TGWQARRLFVELRDTDAGRVSELRP
CCHHHHEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL
CCEECCCHHHHHHHHCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
IRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE
EECCCCHHEEEEEEECCCCCEEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCC
DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHCCCCCCCC
EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWS
CCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
LALSLRLAAFELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP
EEHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TGWQARRLFVELRDTDAGRVSELRP
CCHHHHEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA