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The map label for this gene is virD4

Identifier: 41223312

GI number: 41223312

Start: 199956

End: 201962

Strand: Direct

Name: virD4

Synonym: Atu6184

Alternate gene names: 41223312

Gene position: 199956-201962 (Clockwise)

Preceding gene: 159162000

Following gene: 16119801

Centisome position: 93.34

GC content: 53.01

Gene sequence:

>2007_bases
ATGAATTCGAGCAAGACTACGCCCCAGCGTTTAGCTGTCAGCATCGTATGTTCGCTGGCAGCCGGTTTTTGCGCGGCAAG
TCTCTATGTAACATTTCGCCATGGTTTCAATGGCGAAGCGATGATGACGTTTAGCGTCTTCGCCTTTTGGTACGAGACCC
CGCTCTATATGGGTCATGCGACCCCCGTCTTCTATTGCGGTTTAGCCATTGTCGTCTCGACGTCTATTGTTGTGCTGTTA
AGCCAACTTATCATATCGTTTCGCAATCACGAGCATCATGGCACGGCTCGTTGGGCGGGATTTGGCGAAATGCGGCACGC
CGGTTACCTGCAGCGCTATAATCGTATCAAGGGGCCAATCTTTGGCAAGACGTGTGGCCCTCGTTGGTTCGGCAGCTATC
TGACCAATGGCGAACAGCCTCACAGTCTTGTTGTCGCGCCAACGCGCGCCGGCAAAGGCGTTGGCGTCGTTATTCCGACG
CTCCTAACCTTCAAGGGTTCGGTGATAGCCCTCGACGTCAAAGGCGAGCTTTTTGAGCTGACTTCCAGAGCACGCAAAGC
GGGCGGCGACGCCGTTTTCAAGTTCTCGCCTCTGGATCCAGAGCGACGGACTCATTGTTACAATCCCGTCCTCGATATTG
CAGCTTTACCGCCCGAGCGGCAGTTTACCGAGACGCGCCGCCTCGCCGCAAACCTCATCACGGCCAAAGGCAAGGGAGCG
GAAGGCTTTATCGACGGCGCGCGGGACCTTTTCGTTGCGGGCATCCTTACCTGTATTGAGCGCGGTACGCCAACAATTGG
TGCGGTCTACGACTTATTTGCTCAACCTGGAGAGAAGTACAAACTTTTTGCGCACCTCGCGGAAGAAAGCCGAAATAAAG
AGGCTCAGCGCATTTTCGACAATATGGCGGGTAACGACACGAAAATTTTGACTTCTTATACATCAGTGCTCGGCGACGGC
GGACTTAACCTGTGGGCTGATCCATTGGTTAAAGCAGCGACAAGTCGATCAGATTTTTCCGTCTATGATCTGCGTCGGAA
GAGGACCTGCGTCTATCTTTGCGTCAGTCCCAACGACCTCGAGGTCGTGGCGCCATTGATGCGCCTCCTTTTTCAGCAGG
TCGTGTCAATTCTGCAGCGATCACTGCCAGGTAAAGATGAGCGGCATGAAGTTTTGTTTCTCCTTGACGAATTTAAACAC
CTGGGGAAGCTTGAGGCAATCGAGACCGCGATTACAACCATCGCCGGTTACAAAGGCCGCTTCATGTTTATTATTCAGAG
TCTCTCGGCCTTGACGGGCATCTACGATGACGCGGGCAAACAAAACTTTCTCAGTAACACTGGCGTGCAAGTATTTATGG
CCACGGCCGACGACGAAACACCGACCTATATCTCAAAAGCTATCGGCGACTATACGTTCAAGGCGCGTTCGACCTCATAC
AGTCAAGCCCGAATGTTCGATCATAACATCCAGATTTCCGATCAGGGGGCACCGCTTTTGCGCCCCGAACAAGTGCGCTT
GCTTGACGATAACAATGAAATCGTCCTTATTAAAGGGCATCCGCCTCTCAAACTACGAAAGGTGCGATATTATTCCGATC
GTATGCTGAGGCGCCTTTTCGAATGCCAAATTGGCGCCCTCCCTGAGCCCGCATCTTTGATGCTTTCGGAAGGTGTCCAT
CGGGATGGGCAAGACCTCAGTCAACAAGCCGCCGTCACGGAGGCGCAGGGCTTAGGTGACATCGATTCGATACCTAATAA
TATGGAAGCCGCTACACCGCAAAACAGTGAAATGGATGACGAGCAGGACAGCCTCCCAACTGGAATTGACGTCCCCCAGG
GCCTTATTGAAAGCGATGAGGTGAAAGAAGACGCCGGTGGCGTGGTGCCAGATTTCGGTGTTTCAGCTGAAATGGCTCCA
GCTATGATTGCACAACAGCAGCTGCTGGAGCAGATCATTGCGCTTCAGCAACGATATGGACCCGCGTCCTCGCACTCGGT
GAAATGA

Upstream 100 bases:

>100_bases
CGTTCACGTGAAGGTTGCGGGCGGTAAAGGCTGTGTTGTTCGCAGCAACACCCAAATCAAAAGCCCAATTTGCGATCGAT
CGAAGAATCTCGGTGAAGTG

Downstream 100 bases:

>100_bases
CTTCAAGCTGCCTTTCACATTGGAATCATTCGATGCGGGGCGTCGTCAGATATTCCGGTTGTATCGAATGCGGAGCTAGA
CCCCGAGGTTGCCGATTAAG

Product: type IV secretion system protein VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MNSSKTTPQRLAVSIVCSLAAGFCAASLYVTFRHGFNGEAMMTFSVFAFWYETPLYMGHATPVFYCGLAIVVSTSIVVLL
SQLIISFRNHEHHGTARWAGFGEMRHAGYLQRYNRIKGPIFGKTCGPRWFGSYLTNGEQPHSLVVAPTRAGKGVGVVIPT
LLTFKGSVIALDVKGELFELTSRARKAGGDAVFKFSPLDPERRTHCYNPVLDIAALPPERQFTETRRLAANLITAKGKGA
EGFIDGARDLFVAGILTCIERGTPTIGAVYDLFAQPGEKYKLFAHLAEESRNKEAQRIFDNMAGNDTKILTSYTSVLGDG
GLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKH
LGKLEAIETAITTIAGYKGRFMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSY
SQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRLFECQIGALPEPASLMLSEGVH
RDGQDLSQQAAVTEAQGLGDIDSIPNNMEAATPQNSEMDDEQDSLPTGIDVPQGLIESDEVKEDAGGVVPDFGVSAEMAP
AMIAQQQLLEQIIALQQRYGPASSHSVK

Sequences:

>Translated_668_residues
MNSSKTTPQRLAVSIVCSLAAGFCAASLYVTFRHGFNGEAMMTFSVFAFWYETPLYMGHATPVFYCGLAIVVSTSIVVLL
SQLIISFRNHEHHGTARWAGFGEMRHAGYLQRYNRIKGPIFGKTCGPRWFGSYLTNGEQPHSLVVAPTRAGKGVGVVIPT
LLTFKGSVIALDVKGELFELTSRARKAGGDAVFKFSPLDPERRTHCYNPVLDIAALPPERQFTETRRLAANLITAKGKGA
EGFIDGARDLFVAGILTCIERGTPTIGAVYDLFAQPGEKYKLFAHLAEESRNKEAQRIFDNMAGNDTKILTSYTSVLGDG
GLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKH
LGKLEAIETAITTIAGYKGRFMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSY
SQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRLFECQIGALPEPASLMLSEGVH
RDGQDLSQQAAVTEAQGLGDIDSIPNNMEAATPQNSEMDDEQDSLPTGIDVPQGLIESDEVKEDAGGVVPDFGVSAEMAP
AMIAQQQLLEQIIALQQRYGPASSHSVK
>Mature_668_residues
MNSSKTTPQRLAVSIVCSLAAGFCAASLYVTFRHGFNGEAMMTFSVFAFWYETPLYMGHATPVFYCGLAIVVSTSIVVLL
SQLIISFRNHEHHGTARWAGFGEMRHAGYLQRYNRIKGPIFGKTCGPRWFGSYLTNGEQPHSLVVAPTRAGKGVGVVIPT
LLTFKGSVIALDVKGELFELTSRARKAGGDAVFKFSPLDPERRTHCYNPVLDIAALPPERQFTETRRLAANLITAKGKGA
EGFIDGARDLFVAGILTCIERGTPTIGAVYDLFAQPGEKYKLFAHLAEESRNKEAQRIFDNMAGNDTKILTSYTSVLGDG
GLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKH
LGKLEAIETAITTIAGYKGRFMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSY
SQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRLFECQIGALPEPASLMLSEGVH
RDGQDLSQQAAVTEAQGLGDIDSIPNNMEAATPQNSEMDDEQDSLPTGIDVPQGLIESDEVKEDAGGVVPDFGVSAEMAP
AMIAQQQLLEQIIALQQRYGPASSHSVK

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRD4_AGRT5 (P18594)

Other databases:

- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AF3250
- PIR:   S11841
- RefSeq:   NP_396505.2
- ProteinModelPortal:   P18594
- MINT:   MINT-4794373
- STRING:   P18594
- GeneID:   1137507
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6184
- eggNOG:   COG3505
- HOGENOM:   HBG301716
- OMA:   PERRTHC
- ProtClustDB:   PRK13850
- BioCyc:   ATUM176299-1:ATU6184-MONOMER
- InterPro:   IPR003688

Pfam domain/function: PF02534 TraG

EC number: NA

Molecular weight: Translated: 73529; Mature: 73529

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbdc3be0)-; HASH(0xb951f10)-; HASH(0xb8df104)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSKTTPQRLAVSIVCSLAAGFCAASLYVTFRHGFNGEAMMTFSVFAFWYETPLYMGHA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEHHHHHHHHHHHCCEEECCC
TPVFYCGLAIVVSTSIVVLLSQLIISFRNHEHHGTARWAGFGEMRHAGYLQRYNRIKGPI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
FGKTCGPRWFGSYLTNGEQPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFEL
CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHCCCCEEEEECCCHHHHH
TSRARKAGGDAVFKFSPLDPERRTHCYNPVLDIAALPPERQFTETRRLAANLITAKGKGA
HHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
EGFIDGARDLFVAGILTCIERGTPTIGAVYDLFAQPGEKYKLFAHLAEESRNKEAQRIFD
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHH
NMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDL
HHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEECCCCH
EVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
FMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSY
HHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEECCCCC
SQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRLF
HHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEHHHHHHHHHHHHHHH
ECQIGALPEPASLMLSEGVHRDGQDLSQQAAVTEAQGLGDIDSIPNNMEAATPQNSEMDD
HHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCC
EQDSLPTGIDVPQGLIESDEVKEDAGGVVPDFGVSAEMAPAMIAQQQLLEQIIALQQRYG
CHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PASSHSVK
CCCCCCCH
>Mature Secondary Structure
MNSSKTTPQRLAVSIVCSLAAGFCAASLYVTFRHGFNGEAMMTFSVFAFWYETPLYMGHA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEHHHHHHHHHHHCCEEECCC
TPVFYCGLAIVVSTSIVVLLSQLIISFRNHEHHGTARWAGFGEMRHAGYLQRYNRIKGPI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
FGKTCGPRWFGSYLTNGEQPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFEL
CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHCCCCEEEEECCCHHHHH
TSRARKAGGDAVFKFSPLDPERRTHCYNPVLDIAALPPERQFTETRRLAANLITAKGKGA
HHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
EGFIDGARDLFVAGILTCIERGTPTIGAVYDLFAQPGEKYKLFAHLAEESRNKEAQRIFD
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHH
NMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDL
HHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEECCCCH
EVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
FMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSY
HHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEECCCCC
SQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRLF
HHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEHHHHHHHHHHHHHHH
ECQIGALPEPASLMLSEGVHRDGQDLSQQAAVTEAQGLGDIDSIPNNMEAATPQNSEMDD
HHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCC
EQDSLPTGIDVPQGLIESDEVKEDAGGVVPDFGVSAEMAPAMIAQQQLLEQIIALQQRYG
CHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PASSHSVK
CCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2194232; 11743193; 11743194