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The map label for this gene is virB1

Identifier: 41223307

GI number: 41223307

Start: 183877

End: 184614

Strand: Direct

Name: virB1

Synonym: Atu6167

Alternate gene names: 41223307

Gene position: 183877-184614 (Clockwise)

Preceding gene: 16119781

Following gene: 16119783

Centisome position: 85.83

GC content: 56.64

Gene sequence:

>738_bases
ATGTTGAAGGCAACAGGGCCGCTGTCGATTATCTTACTGGCCTCCACGTGCCCGTCGAGTGGTGCTGCCCCACTTTCATT
TGCTGAGTTCAATAATTTTGCACGCGAATGCGCTCCATCCGTTGCTCCATCTACGCTTGCAGCGATCGCTCAGGTCGAAA
GTCGCTTTGATCCGCTTGCTGTGCATGACAATACCACCGGCGAAACGCTTCACTGGCAGAACCAGGCTCAAGCAACGCAA
GTCGTGATGGACCGTCTCGAAGCACGGCATTCGCTGGATGTTGGGCTCATGCAGATCAATTCCCGGAATTTTTCCGTGCT
CGGTCTGACACCTGACGGAGCCCTTCAACCTTGCACGTCATTATCTGTCGCCGCAAACTTGCTTGGGAGCCGCTACGCTG
GCGGCAACACGGCTGACGACGAGCAATTGTCGCTTCGTCGGGCAATCTCCGCCTATAACACCGGTGATTTCACGCACGGC
TTCGCGAACGGCTACGTGCGAAAAGTTGAAACGGCCGCTCAACAGCTCGTCCCCCCGTTAACCGCGCGTCCAAAAGATGA
TCGTGAGAAGCCGGGATCCGAGGAAACATGGGATGTTTGGGGGGCATATAAGCGTCGTTCCCCGGAGGGCGGAGCTGGCG
GGTCATCCGGTCCGCCTCCGCCGCCAGACGAGGACAACCGCAAATCCGAAGACGACGATCAACTCTTGTTCGACTTAAAT
CAAGGAGGTCCGCAATAA

Upstream 100 bases:

>100_bases
TCCTAGAGTAACCGACCCTCCCGATAATCGTGAACATCAGATGACAGCATTTCTTCCGACCGAAGTGGCTGTGTTGGTTA
TGAGCTTGGGGAGATGGGGA

Downstream 100 bases:

>100_bases
TGCGATGCTTTGAAAGATACCGTGTACATCTGAATCGCCTCTCGCTCTCGAACGCGGTGATGCGCATGGTATCCGGCTAT
GCGCCGAGCGTGGTCGGTGC

Product: type IV secretion system lytic transglycosylase VirB1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLKATGPLSIILLASTCPSSGAAPLSFAEFNNFARECAPSVAPSTLAAIAQVESRFDPLAVHDNTTGETLHWQNQAQATQ
VVMDRLEARHSLDVGLMQINSRNFSVLGLTPDGALQPCTSLSVAANLLGSRYAGGNTADDEQLSLRRAISAYNTGDFTHG
FANGYVRKVETAAQQLVPPLTARPKDDREKPGSEETWDVWGAYKRRSPEGGAGGSSGPPPPPDEDNRKSEDDDQLLFDLN
QGGPQ

Sequences:

>Translated_245_residues
MLKATGPLSIILLASTCPSSGAAPLSFAEFNNFARECAPSVAPSTLAAIAQVESRFDPLAVHDNTTGETLHWQNQAQATQ
VVMDRLEARHSLDVGLMQINSRNFSVLGLTPDGALQPCTSLSVAANLLGSRYAGGNTADDEQLSLRRAISAYNTGDFTHG
FANGYVRKVETAAQQLVPPLTARPKDDREKPGSEETWDVWGAYKRRSPEGGAGGSSGPPPPPDEDNRKSEDDDQLLFDLN
QGGPQ
>Mature_245_residues
MLKATGPLSIILLASTCPSSGAAPLSFAEFNNFARECAPSVAPSTLAAIAQVESRFDPLAVHDNTTGETLHWQNQAQATQ
VVMDRLEARHSLDVGLMQINSRNFSVLGLTPDGALQPCTSLSVAANLLGSRYAGGNTADDEQLSLRRAISAYNTGDFTHG
FANGYVRKVETAAQQLVPPLTARPKDDREKPGSEETWDVWGAYKRRSPEGGAGGSSGPPPPPDEDNRKSEDDDQLLFDLN
QGGPQ

Specific function: VirB proteins are suggested to act at the bacterial surface and there play an important role in directing T-DNA transfer to plant cells

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRB1_AGRT5 (P17791)

Other databases:

- EMBL:   X53264
- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AE3248
- PIR:   S12341
- RefSeq:   NP_396487.2
- ProteinModelPortal:   P17791
- STRING:   P17791
- GeneID:   1137490
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6167
- eggNOG:   NOG06545
- HOGENOM:   HBG742087
- OMA:   FARECAP
- ProtClustDB:   PRK13864
- BioCyc:   ATUM176299-1:ATU6167-MONOMER
- InterPro:   IPR008258

Pfam domain/function: PF01464 SLT

EC number: NA

Molecular weight: Translated: 26134; Mature: 26134

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKATGPLSIILLASTCPSSGAAPLSFAEFNNFARECAPSVAPSTLAAIAQVESRFDPLA
CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE
VHDNTTGETLHWQNQAQATQVVMDRLEARHSLDVGLMQINSRNFSVLGLTPDGALQPCTS
EECCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCHHH
LSVAANLLGSRYAGGNTADDEQLSLRRAISAYNTGDFTHGFANGYVRKVETAAQQLVPPL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
TARPKDDREKPGSEETWDVWGAYKRRSPEGGAGGSSGPPPPPDEDNRKSEDDDQLLFDLN
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
QGGPQ
CCCCC
>Mature Secondary Structure
MLKATGPLSIILLASTCPSSGAAPLSFAEFNNFARECAPSVAPSTLAAIAQVESRFDPLA
CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE
VHDNTTGETLHWQNQAQATQVVMDRLEARHSLDVGLMQINSRNFSVLGLTPDGALQPCTS
EECCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCHHH
LSVAANLLGSRYAGGNTADDEQLSLRRAISAYNTGDFTHGFANGYVRKVETAAQQLVPPL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
TARPKDDREKPGSEETWDVWGAYKRRSPEGGAGGSSGPPPPPDEDNRKSEDDDQLLFDLN
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
QGGPQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2370849; 2194232; 2233252; 11743193; 11743194