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The map label for this gene is yeaM [H]

Identifier: 39998476

GI number: 39998476

Start: 3725285

End: 3726118

Strand: Reverse

Name: yeaM [H]

Synonym: GSU3387

Alternate gene names: 39998476

Gene position: 3726118-3725285 (Counterclockwise)

Preceding gene: 39998478

Following gene: 39998475

Centisome position: 97.69

GC content: 63.55

Gene sequence:

>834_bases
ATGCCTTCGAACTCTGTCCGCACGCAGACCCCGCCATTCACCAATGAGCTGCCCGCGCCGATCTTCTTCCGGTCAGCTAC
CGTGCCGGCCCATGCCTCATATCCCCGGCACCGGCACCCTTGGGGTGAATTCGTCTACTCCTTCAGCGGCGTCATGGAGG
TTAAAATTGCCGGCCACCACTACCTGGCTCCACCCCACTACGGGATCTGGCTGCCTCCGGATGTCGAGCATGTGGGGCTC
AATCGCCATGAAGCATGCCACTGCTCCCTCTATGTGGAGCGCGGTTTGTGCAGCACTCTCCCTGCCGCTGTCTGCGCGGT
CACCGTCCGGCCGCTCATGCGGTCGATCCTCGATCACCTGCGACAGTATCCGCCGGGGCTGTCGACGACGGACGAAGAGG
CCCGCCTCATGCGGGTCCTTGTCGACCAACTGGCGGCAGCGGAGCGTGCCGGCTCCTATCTCCCCACCTCCGACGATCCG
GTCCTCGGTCCCATCCTTCGGGCGATGGAAGAGCATCCGGGCGACAACCGACCTCTGTCAGAACTCGTCAGCCTGGCCGG
TTCTACGGAGCGTACGGTCATGCGCCGGTGTCAGCGGGAGCTCGGCATGTCGTTTGCGGAATGGAGACAGCGACTGCGAG
TCGTAAAGGCAATGTCGCTGCTCGAAGAGGGAATGACGGTTCAGGCGATTGCGGCGTATTTCGGCTACGGGAGCGCGTCG
GCCTTCATTGCTATGTTCCGGCGTGTCGTGGGGCTAACGCCGGCGGAATACCGAAAGAGCGGGAGGGGGGAAGCGGTTTT
CGGACGGGGCGGCTGTTGCGACAAGGGCACTTGA

Upstream 100 bases:

>100_bases
CTTTGGCTGAAACTATGGATATAGTGAAATTATGCCAATAGATGACGTTTACTTGCCACTGCCGTCCGCAACAGTTCCGG
TTGATCAAGGGAGCAGAGCA

Downstream 100 bases:

>100_bases
CGTCGAAGCGGCTCGACCGCCTAATGGCATGGGGCTGCAACGCACGTCAGTGGGCGGCTGTGCAATGGAAAAGAAAATGG
CCGATCATCATGAGACGATC

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPSNSVRTQTPPFTNELPAPIFFRSATVPAHASYPRHRHPWGEFVYSFSGVMEVKIAGHHYLAPPHYGIWLPPDVEHVGL
NRHEACHCSLYVERGLCSTLPAAVCAVTVRPLMRSILDHLRQYPPGLSTTDEEARLMRVLVDQLAAAERAGSYLPTSDDP
VLGPILRAMEEHPGDNRPLSELVSLAGSTERTVMRRCQRELGMSFAEWRQRLRVVKAMSLLEEGMTVQAIAAYFGYGSAS
AFIAMFRRVVGLTPAEYRKSGRGEAVFGRGGCCDKGT

Sequences:

>Translated_277_residues
MPSNSVRTQTPPFTNELPAPIFFRSATVPAHASYPRHRHPWGEFVYSFSGVMEVKIAGHHYLAPPHYGIWLPPDVEHVGL
NRHEACHCSLYVERGLCSTLPAAVCAVTVRPLMRSILDHLRQYPPGLSTTDEEARLMRVLVDQLAAAERAGSYLPTSDDP
VLGPILRAMEEHPGDNRPLSELVSLAGSTERTVMRRCQRELGMSFAEWRQRLRVVKAMSLLEEGMTVQAIAAYFGYGSAS
AFIAMFRRVVGLTPAEYRKSGRGEAVFGRGGCCDKGT
>Mature_276_residues
PSNSVRTQTPPFTNELPAPIFFRSATVPAHASYPRHRHPWGEFVYSFSGVMEVKIAGHHYLAPPHYGIWLPPDVEHVGLN
RHEACHCSLYVERGLCSTLPAAVCAVTVRPLMRSILDHLRQYPPGLSTTDEEARLMRVLVDQLAAAERAGSYLPTSDDPV
LGPILRAMEEHPGDNRPLSELVSLAGSTERTVMRRCQRELGMSFAEWRQRLRVVKAMSLLEEGMTVQAIAAYFGYGSASA
FIAMFRRVVGLTPAEYRKSGRGEAVFGRGGCCDKGT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=225, Percent_Identity=29.7777777777778, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30666; Mature: 30534

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNSVRTQTPPFTNELPAPIFFRSATVPAHASYPRHRHPWGEFVYSFSGVMEVKIAGHH
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCCE
YLAPPHYGIWLPPDVEHVGLNRHEACHCSLYVERGLCSTLPAAVCAVTVRPLMRSILDHL
EECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
RQYPPGLSTTDEEARLMRVLVDQLAAAERAGSYLPTSDDPVLGPILRAMEEHPGDNRPLS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH
ELVSLAGSTERTVMRRCQRELGMSFAEWRQRLRVVKAMSLLEEGMTVQAIAAYFGYGSAS
HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH
AFIAMFRRVVGLTPAEYRKSGRGEAVFGRGGCCDKGT
HHHHHHHHHHCCCHHHHHHCCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
PSNSVRTQTPPFTNELPAPIFFRSATVPAHASYPRHRHPWGEFVYSFSGVMEVKIAGHH
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCCE
YLAPPHYGIWLPPDVEHVGLNRHEACHCSLYVERGLCSTLPAAVCAVTVRPLMRSILDHL
EECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
RQYPPGLSTTDEEARLMRVLVDQLAAAERAGSYLPTSDDPVLGPILRAMEEHPGDNRPLS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH
ELVSLAGSTERTVMRRCQRELGMSFAEWRQRLRVVKAMSLLEEGMTVQAIAAYFGYGSAS
HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH
AFIAMFRRVVGLTPAEYRKSGRGEAVFGRGGCCDKGT
HHHHHHHHHHCCCHHHHHHCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]