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The map label for this gene is ydhC [H]

Identifier: 39998459

GI number: 39998459

Start: 3703818

End: 3704525

Strand: Reverse

Name: ydhC [H]

Synonym: GSU3370

Alternate gene names: 39998459

Gene position: 3704525-3703818 (Counterclockwise)

Preceding gene: 39998461

Following gene: 39998458

Centisome position: 97.13

GC content: 57.49

Gene sequence:

>708_bases
ATGAAAAAACCGATGGAGAAGCACCTCACCCTCAGGGAAAAGATCCTCGAAACCATTCGCGATGCCATCATGACCGGCGC
CCTCAAGCCGGGAGAAAAAGTGGCCGAGCCTGATCTCGCCGAACGGTTCGGCATCAGCCGCACACCGATCCGGGAGGCGT
TCCGCCAGCTGGAGTCGGAGGGATATCTGACCGTGATCCCGCGCAAAGGAGCGGTTGTCACGTTTTTCTCTCCCCGTGAT
GTGGAGGAATTTTACGCCATCAAGAGCATTCTTGAGGGGTATGCGGCCCGCCGCGCCTGTGAGAAGCTCACGGACAAGGA
AATCGAGAAGCTTCGAACCATCAACGAGAAATTGCGCCACCTGGCGGATGAGGGTGACGTACGCCACTTTTTCCGGATTC
ACAACGATTTTCATGAGCTGTTCCTTCGGGCGGCCGATAACGAGAAGCTCTCGGAGCTCGTCACCAACCTTGTCCGGAAG
TTTCAGCGGCTTCGCTACGCCTCCCTCAGCCTGCCCGGTCGGATGCATATTTCCGTGAAGGAGCACGAACGGATCATTGA
GGCATTTCAGTCCCGCAATGCCGACATGGCCGAAACCCTTGTCCGCAAGAACGCTGAGTACGGAGGCCGGGTCCTCATGC
AGGAAACCGACGGCGCACCTCCTCTCAAACCTGCCGAACAGGCTGCTGCCCTGCAACTTGATATCTAG

Upstream 100 bases:

>100_bases
GTGCTTTGTAACAGACCTTTCTTTTTTAAAACATGCTAACTCCTGCTTGACAATCCCTGTATACTGTATACAATAAGTCA
GCCCCCGCCGGAGTGGACTT

Downstream 100 bases:

>100_bases
TGTCCCGCTTGGTTAGTTTCTTCTCGCACTCGAGGTCCTTTTAGCCGCAGCCGGCGCTGCGGCTCCTTGGCGTGGCCGGA
CTGGGTCTGTGTCGCCGCCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKKPMEKHLTLREKILETIRDAIMTGALKPGEKVAEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVTFFSPRD
VEEFYAIKSILEGYAARRACEKLTDKEIEKLRTINEKLRHLADEGDVRHFFRIHNDFHELFLRAADNEKLSELVTNLVRK
FQRLRYASLSLPGRMHISVKEHERIIEAFQSRNADMAETLVRKNAEYGGRVLMQETDGAPPLKPAEQAAALQLDI

Sequences:

>Translated_235_residues
MKKPMEKHLTLREKILETIRDAIMTGALKPGEKVAEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVTFFSPRD
VEEFYAIKSILEGYAARRACEKLTDKEIEKLRTINEKLRHLADEGDVRHFFRIHNDFHELFLRAADNEKLSELVTNLVRK
FQRLRYASLSLPGRMHISVKEHERIIEAFQSRNADMAETLVRKNAEYGGRVLMQETDGAPPLKPAEQAAALQLDI
>Mature_235_residues
MKKPMEKHLTLREKILETIRDAIMTGALKPGEKVAEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVTFFSPRD
VEEFYAIKSILEGYAARRACEKLTDKEIEKLRTINEKLRHLADEGDVRHFFRIHNDFHELFLRAADNEKLSELVTNLVRK
FQRLRYASLSLPGRMHISVKEHERIIEAFQSRNADMAETLVRKNAEYGGRVLMQETDGAPPLKPAEQAAALQLDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=188, Percent_Identity=27.1276595744681, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI87081914, Length=191, Percent_Identity=26.7015706806283, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27027; Mature: 27027

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPMEKHLTLREKILETIRDAIMTGALKPGEKVAEPDLAERFGISRTPIREAFRQLESE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHCCCCCHHHHHHHHHHCC
GYLTVIPRKGAVVTFFSPRDVEEFYAIKSILEGYAARRACEKLTDKEIEKLRTINEKLRH
CCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADEGDVRHFFRIHNDFHELFLRAADNEKLSELVTNLVRKFQRLRYASLSLPGRMHISVK
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
EHERIIEAFQSRNADMAETLVRKNAEYGGRVLMQETDGAPPLKPAEQAAALQLDI
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MKKPMEKHLTLREKILETIRDAIMTGALKPGEKVAEPDLAERFGISRTPIREAFRQLESE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHCCCCCHHHHHHHHHHCC
GYLTVIPRKGAVVTFFSPRDVEEFYAIKSILEGYAARRACEKLTDKEIEKLRTINEKLRH
CCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADEGDVRHFFRIHNDFHELFLRAADNEKLSELVTNLVRKFQRLRYASLSLPGRMHISVK
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
EHERIIEAFQSRNADMAETLVRKNAEYGGRVLMQETDGAPPLKPAEQAAALQLDI
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]