| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is bhbA [H]
Identifier: 39998391
GI number: 39998391
Start: 3624910
End: 3626568
Strand: Direct
Name: bhbA [H]
Synonym: GSU3302
Alternate gene names: 39998391
Gene position: 3624910-3626568 (Clockwise)
Preceding gene: 39998390
Following gene: 39998392
Centisome position: 95.04
GC content: 60.64
Gene sequence:
>1659_bases ATGAGCATCAGCGAAAAGAAACAAGCATGGCAGGATACTGTCGTGGCCAAGAATATTGCCAAGGCCCCGGAGCGGAAGCC CGAATTCCGCACCACCTCGGGCATCGAAATGGAGCGCTGCTTCACCCCGACCTTCGAAGGCTATGAGGGTTACGAAGAAA AACTGGGGTTCCCGGGTCAGTACCCGTTCACCCGGGGAGTCCAGCCCACCATGTACCGCGGGCGCTTCTGGACCATGCGG CAGTACGCGGGATTCGGCACGGCAAAGGAATCCAACGAGCGCTACAAGTACCTCCTCCAAGCGGGCCAGACCGGTCTTTC CGTCGCGTTCGACCTTCCCACTCAGATGGGCTACGATTCCGATGCCGCCATGGCCGCCGGTGAAGTGGGCAAGGTGGGGG TCGCCATCGACTCCCTGGCCGACATGGAAGTGCTCTTCGACGGCATCCCCCTTGACCAGGTTTCCACTTCCATGACCATC AACTCCACGGCCGCCATCCTTCTTGCCATGTATATTGCCGTGGCCGAGAAGCAAGGCGTGTCGGCCGACAAGATTTCCGG CACCATCCAGAACGACATCCTCAAGGAGTACATGGCCCGCGGCACCTACATCTACCCCCCCCGCGAGTCCATGCGGATCA TTACCGACATCTTTGCCTACTGCAAGGATTGTGTTCCGAAATGGAACACCATCTCCATCTCCGGCTACCATATCCGTGAG GCCGGCTCCAGCGCAGTGCAGGAAGTAGCGTTCACCCTGGCTGACGGCATCGCTTACGTGGATGCCGCCATCAAGGCAGG CCTGTCGGTTGATGAATTCGCCCCTCGTCTCGCCTTCTTCTTTAACGCACACAACAACCTGCTGGAAGAAGTGGCGAAAT TCCGGGCCGCCCGCCGCATGTGGGCCAAGATCATGAAAGAGCGCTTCGGCGCCAAAGATCCCCGGTCCATGATGCTGCGC TTCCACACTCAGACCGCCGGCTGCACCCTCACCGCCCAGCAGCCCGACAACAACATCATGCGGGTCACCATCCAGGCTCT GGCGGCGGTGCTTGGCGGCACCCAGTCGCTCCACACGAACTCACGCGACGAGGCGCTGGCGCTGCCCACCGAAGATTCGG TCCGGATTGCGCTCCGCACCCAGCAGGTCATTGCCTATGAGTCGGGTGCCGCCGATTCCATTGATCCTCTGGCAGGCAGC TTCCTCGTGGAATCCCTTACCGACCAGATCGAGCAGGCCGCATTCGACTACATTGAGAAGATCGACCGCCTCGGCGGCGC CGTAGAGGCTATCTCCCGCGGCTTCCAGCAGAAGGAGATCCAGGACTCGGCCTACGCCTACCAGCGTGCCATCGAAACCG ACGAAATGATCATTGTCGGGGTCAACCGCTTTACCATCCAGAACGAGCCCCAGCCCGAACTTCTCAAGATTAAGGAAGAA GTGGAGATCGCCCAGAAAAAGGCACTCACCGACATGAAAGCCAAGCGGGACAGCGCGAAGGTCCAGGAAGCCCTCAAGGC GCTTGAGGCAGCGGCCCGGGGCACGGACAACCTGATGCCTCCCATCCTGCAGGCCGTCAAGACCTATGCCACCCTCGGCG AGATTGCCGATGTGCTGCGTGGCGTCTTCGGCGTCCACCGGGAGACGGTGGTCCTCTAA
Upstream 100 bases:
>100_bases CACACCGCAGCTCTGACGCCCCGGACGGGGCGTCTCTGCGTACGGTGCTATGACTCTGCAGAGCACTCAGAGACTCCCAA CGCATCAGAAGGAGATATCC
Downstream 100 bases:
>100_bases GTTGTCTCGTCGGGACAGCTCGCCTGAGCTGTCCGACAGAGGGAAAGGACAGGATTAATGCTCAGCAAAATCAACCATAT CGGCATTGCCGTAACATCCC
Product: methylmalonyl-CoA mutase
Products: NA
Alternate protein names: MCM [H]
Number of amino acids: Translated: 552; Mature: 551
Protein sequence:
>552_residues MSISEKKQAWQDTVVAKNIAKAPERKPEFRTTSGIEMERCFTPTFEGYEGYEEKLGFPGQYPFTRGVQPTMYRGRFWTMR QYAGFGTAKESNERYKYLLQAGQTGLSVAFDLPTQMGYDSDAAMAAGEVGKVGVAIDSLADMEVLFDGIPLDQVSTSMTI NSTAAILLAMYIAVAEKQGVSADKISGTIQNDILKEYMARGTYIYPPRESMRIITDIFAYCKDCVPKWNTISISGYHIRE AGSSAVQEVAFTLADGIAYVDAAIKAGLSVDEFAPRLAFFFNAHNNLLEEVAKFRAARRMWAKIMKERFGAKDPRSMMLR FHTQTAGCTLTAQQPDNNIMRVTIQALAAVLGGTQSLHTNSRDEALALPTEDSVRIALRTQQVIAYESGAADSIDPLAGS FLVESLTDQIEQAAFDYIEKIDRLGGAVEAISRGFQQKEIQDSAYAYQRAIETDEMIIVGVNRFTIQNEPQPELLKIKEE VEIAQKKALTDMKAKRDSAKVQEALKALEAAARGTDNLMPPILQAVKTYATLGEIADVLRGVFGVHRETVVL
Sequences:
>Translated_552_residues MSISEKKQAWQDTVVAKNIAKAPERKPEFRTTSGIEMERCFTPTFEGYEGYEEKLGFPGQYPFTRGVQPTMYRGRFWTMR QYAGFGTAKESNERYKYLLQAGQTGLSVAFDLPTQMGYDSDAAMAAGEVGKVGVAIDSLADMEVLFDGIPLDQVSTSMTI NSTAAILLAMYIAVAEKQGVSADKISGTIQNDILKEYMARGTYIYPPRESMRIITDIFAYCKDCVPKWNTISISGYHIRE AGSSAVQEVAFTLADGIAYVDAAIKAGLSVDEFAPRLAFFFNAHNNLLEEVAKFRAARRMWAKIMKERFGAKDPRSMMLR FHTQTAGCTLTAQQPDNNIMRVTIQALAAVLGGTQSLHTNSRDEALALPTEDSVRIALRTQQVIAYESGAADSIDPLAGS FLVESLTDQIEQAAFDYIEKIDRLGGAVEAISRGFQQKEIQDSAYAYQRAIETDEMIIVGVNRFTIQNEPQPELLKIKEE VEIAQKKALTDMKAKRDSAKVQEALKALEAAARGTDNLMPPILQAVKTYATLGEIADVLRGVFGVHRETVVL >Mature_551_residues SISEKKQAWQDTVVAKNIAKAPERKPEFRTTSGIEMERCFTPTFEGYEGYEEKLGFPGQYPFTRGVQPTMYRGRFWTMRQ YAGFGTAKESNERYKYLLQAGQTGLSVAFDLPTQMGYDSDAAMAAGEVGKVGVAIDSLADMEVLFDGIPLDQVSTSMTIN STAAILLAMYIAVAEKQGVSADKISGTIQNDILKEYMARGTYIYPPRESMRIITDIFAYCKDCVPKWNTISISGYHIREA GSSAVQEVAFTLADGIAYVDAAIKAGLSVDEFAPRLAFFFNAHNNLLEEVAKFRAARRMWAKIMKERFGAKDPRSMMLRF HTQTAGCTLTAQQPDNNIMRVTIQALAAVLGGTQSLHTNSRDEALALPTEDSVRIALRTQQVIAYESGAADSIDPLAGSF LVESLTDQIEQAAFDYIEKIDRLGGAVEAISRGFQQKEIQDSAYAYQRAIETDEMIIVGVNRFTIQNEPQPELLKIKEEV EIAQKKALTDMKAKRDSAKVQEALKALEAAARGTDNLMPPILQAVKTYATLGEIADVLRGVFGVHRETVVL
Specific function: Catalyzes the interconversion of succinyl-CoA and methylmalonyl-CoA during the polyhydroxyalkanoate degradation pathway [H]
COG id: COG1884
COG function: function code I; Methylmalonyl-CoA mutase, N-terminal domain/subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
Organism=Homo sapiens, GI156105689, Length=493, Percent_Identity=49.4929006085193, Blast_Score=489, Evalue=1e-138, Organism=Escherichia coli, GI1789284, Length=515, Percent_Identity=51.8446601941748, Blast_Score=503, Evalue=1e-143, Organism=Caenorhabditis elegans, GI25144500, Length=491, Percent_Identity=53.3604887983707, Blast_Score=527, Evalue=1e-150,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006159 - InterPro: IPR016176 - InterPro: IPR014348 - InterPro: IPR006158 - InterPro: IPR006099 - InterPro: IPR006098 [H]
Pfam domain/function: PF02310 B12-binding; PF01642 MM_CoA_mutase [H]
EC number: =5.4.99.2 [H]
Molecular weight: Translated: 60985; Mature: 60854
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISEKKQAWQDTVVAKNIAKAPERKPEFRTTSGIEMERCFTPTFEGYEGYEEKLGFPGQ CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCC YPFTRGVQPTMYRGRFWTMRQYAGFGTAKESNERYKYLLQAGQTGLSVAFDLPTQMGYDS CCCCCCCCCCEECCCEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHCCCCC DAAMAAGEVGKVGVAIDSLADMEVLFDGIPLDQVSTSMTINSTAAILLAMYIAVAEKQGV CHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEECHHHHHHHHHHHHHHHHCCC SADKISGTIQNDILKEYMARGTYIYPPRESMRIITDIFAYCKDCVPKWNTISISGYHIRE CHHHHCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEHH AGSSAVQEVAFTLADGIAYVDAAIKAGLSVDEFAPRLAFFFNAHNNLLEEVAKFRAARRM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAKIMKERFGAKDPRSMMLRFHTQTAGCTLTAQQPDNNIMRVTIQALAAVLGGTQSLHTN HHHHHHHHCCCCCCHHHHHEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHCCCC SRDEALALPTEDSVRIALRTQQVIAYESGAADSIDPLAGSFLVESLTDQIEQAAFDYIEK CCCCEEECCCCCCEEEEEEHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IDRLGGAVEAISRGFQQKEIQDSAYAYQRAIETDEMIIVGVNRFTIQNEPQPELLKIKEE HHHHCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHH VEIAQKKALTDMKAKRDSAKVQEALKALEAAARGTDNLMPPILQAVKTYATLGEIADVLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH GVFGVHRETVVL HHHHCCHHHCCC >Mature Secondary Structure SISEKKQAWQDTVVAKNIAKAPERKPEFRTTSGIEMERCFTPTFEGYEGYEEKLGFPGQ CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCC YPFTRGVQPTMYRGRFWTMRQYAGFGTAKESNERYKYLLQAGQTGLSVAFDLPTQMGYDS CCCCCCCCCCEECCCEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHCCCCC DAAMAAGEVGKVGVAIDSLADMEVLFDGIPLDQVSTSMTINSTAAILLAMYIAVAEKQGV CHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEECHHHHHHHHHHHHHHHHCCC SADKISGTIQNDILKEYMARGTYIYPPRESMRIITDIFAYCKDCVPKWNTISISGYHIRE CHHHHCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEHH AGSSAVQEVAFTLADGIAYVDAAIKAGLSVDEFAPRLAFFFNAHNNLLEEVAKFRAARRM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAKIMKERFGAKDPRSMMLRFHTQTAGCTLTAQQPDNNIMRVTIQALAAVLGGTQSLHTN HHHHHHHHCCCCCCHHHHHEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHCCCC SRDEALALPTEDSVRIALRTQQVIAYESGAADSIDPLAGSFLVESLTDQIEQAAFDYIEK CCCCEEECCCCCCEEEEEEHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IDRLGGAVEAISRGFQQKEIQDSAYAYQRAIETDEMIIVGVNRFTIQNEPQPELLKIKEE HHHHCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHH VEIAQKKALTDMKAKRDSAKVQEALKALEAAARGTDNLMPPILQAVKTYATLGEIADVLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH GVFGVHRETVVL HHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9889346; 11481431 [H]