Click here to switch to the map view.

The map label for this gene is cheD3

Identifier: 39998291

GI number: 39998291

Start: 3508489

End: 3508977

Strand: Direct

Name: cheD3

Synonym: GSU3201

Alternate gene names: 39998291

Gene position: 3508489-3508977 (Clockwise)

Preceding gene: 39998290

Following gene: 39998292

Centisome position: 91.99

GC content: 61.35

Gene sequence:

>489_bases
TTGAGCCGGATCGTCAGCGTCGGCATATCGGAATTCAAGATTGCATCGGCCCCGACGATCCTCATGACCTACGGCCTCGG
CTCCTGCGTCGGCATTGCACTCCACGATCCGGTCGCGCTCACCGGCGGGCTCGCCCACACCCTCCTCCCCGCTCCGGTCC
GGGGGATGGACTCCATGGTTAAATCAGCAAAATTCACCTGTTGGGCGGTTGACCTGATGGTTGAAGAGCTCATTAAATGC
GGTTGCGTCGCTGAACGTCTTGTGGCAAAATTGGCCGGCGGCGCGACCATGTTCGAACCACAACACCGCACCACCCACAG
TGGCATCGGCGAGCGTAACGTGACGGCGGCCAAAGAGGCTCTCGAGCGGCGCGGCATTCCTCTGGTGGCATCGGACACCG
GCGACGATTACGGCCGGAGCCTGGAATTCAATACGGTAACAGGAGTCATCACGGTGCGGGCGCTGCAGCGTCCCATCAAG
CGCATGTGA

Upstream 100 bases:

>100_bases
CCGAATTTTTCGGCGAAGAGGAGAAAATCGGCGGTCAGTTCTTCCTGCTCCCCGACCCCGAATCTCTCAGGATCATCCTT
GACGCCATCGGAGTAAAACT

Downstream 100 bases:

>100_bases
TCGCACGGTCCGGACGCCGGCGGGCAACGGAGAGGTGATATGAAGGGGCTCAGACTCCTGGCGGCGATCATGGCGGTCGC
CCTGCTTCCATTGACGGTCA

Product: chemotaxis protein CheD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSRIVSVGISEFKIASAPTILMTYGLGSCVGIALHDPVALTGGLAHTLLPAPVRGMDSMVKSAKFTCWAVDLMVEELIKC
GCVAERLVAKLAGGATMFEPQHRTTHSGIGERNVTAAKEALERRGIPLVASDTGDDYGRSLEFNTVTGVITVRALQRPIK
RM

Sequences:

>Translated_162_residues
MSRIVSVGISEFKIASAPTILMTYGLGSCVGIALHDPVALTGGLAHTLLPAPVRGMDSMVKSAKFTCWAVDLMVEELIKC
GCVAERLVAKLAGGATMFEPQHRTTHSGIGERNVTAAKEALERRGIPLVASDTGDDYGRSLEFNTVTGVITVRALQRPIK
RM
>Mature_161_residues
SRIVSVGISEFKIASAPTILMTYGLGSCVGIALHDPVALTGGLAHTLLPAPVRGMDSMVKSAKFTCWAVDLMVEELIKCG
CVAERLVAKLAGGATMFEPQHRTTHSGIGERNVTAAKEALERRGIPLVASDTGDDYGRSLEFNTVTGVITVRALQRPIKR
M

Specific function: Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis

COG id: COG1871

COG function: function code NT; Chemotaxis protein; stimulates methylation of MCP proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CheD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CHED3_GEOSL (Q747R4)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_954242.1
- HSSP:   Q9X005
- ProteinModelPortal:   Q747R4
- SMR:   Q747R4
- GeneID:   2688372
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU3201
- NMPDR:   fig|243231.1.peg.3180
- TIGR:   GSU3201
- HOGENOM:   HBG531149
- OMA:   RITAKFA
- ProtClustDB:   CLSK743191
- BioCyc:   GSUL243231:GSU_3201-MONOMER
- BRENDA:   3.5.1.44
- GO:   GO:0006935
- HAMAP:   MF_01440
- InterPro:   IPR005659

Pfam domain/function: PF03975 CheD

EC number: =3.5.1.44

Molecular weight: Translated: 17253; Mature: 17122

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIVSVGISEFKIASAPTILMTYGLGSCVGIALHDPVALTGGLAHTLLPAPVRGMDSMV
CCCCHHCCCCCEEECCCCEEEEECCCCHHEEEHCCCCHHHHCCHHHHHCCCCCCHHHHHH
KSAKFTCWAVDLMVEELIKCGCVAERLVAKLAGGATMFEPQHRTTHSGIGERNVTAAKEA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHH
LERRGIPLVASDTGDDYGRSLEFNTVTGVITVRALQRPIKRM
HHHCCCCEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRIVSVGISEFKIASAPTILMTYGLGSCVGIALHDPVALTGGLAHTLLPAPVRGMDSMV
CCCHHCCCCCEEECCCCEEEEECCCCHHEEEHCCCCHHHHCCHHHHHCCCCCCHHHHHH
KSAKFTCWAVDLMVEELIKCGCVAERLVAKLAGGATMFEPQHRTTHSGIGERNVTAAKEA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHH
LERRGIPLVASDTGDDYGRSLEFNTVTGVITVRALQRPIKRM
HHHCCCCEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA