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The map label for this gene is yqhC [H]

Identifier: 39998217

GI number: 39998217

Start: 3427883

End: 3428821

Strand: Direct

Name: yqhC [H]

Synonym: GSU3127

Alternate gene names: 39998217

Gene position: 3427883-3428821 (Clockwise)

Preceding gene: 39998211

Following gene: 39998218

Centisome position: 89.87

GC content: 63.58

Gene sequence:

>939_bases
ATGCAACATAGGGATGACACTGATCGGATCGAGTGCTGCGAGTTGACAGCCGCGCTGGAAGGACTGGTAGCGAGAATTGC
CCGATGGACCGAGACGGAGGAACGGGTCACCACCGCGGTGCCGGGCTTGTTCCTCTTTCGGAAGGAACATCCAACCGAGC
CGATGAGCGGCATGTACGAGCCGAGCATCTGTCTGGTCGCGCAGGGGGCGAAGCGGGTGCTGCTCGGGGACGACACATAT
GTGTATGACGCCCGCAATTACCTGATCACCTCGGTGCACCTGCCGACGGTCGTGCAGATCACTGAGGCAAGTCCCGAGCA
GCCATATCTGGGACTCAGCATGCGGCTCGACCAGCGGGAGATCTCGCAGCTGATGGTTGACAGCAATCTGCCGCCCCCTC
CGCCACAGCAATCGACCCGCGGGATGGCGACCAGCGACGTGACGCTGCCGCTGCTCTCCGCCTTTCATCGCCTCATCGAC
CTGCTCGGCGAGGAAAAGGACATCCCGATCCTCGCGCCGATCATCCAGCGCGAGATCATCTACCGGCTGCTCGTCGGCGA
CCAGGGGGCCCGGCTGCGCCAGATCGCCTCGGCCGGAAGCCAGAGCCAGCAGATCGCCCGGGCCATCGAATGGCTGAAGG
GAAACTTCACCCAGCCGCTCCGGATCGACGATCTCGCCGAGCAGGCCCGCATGAGCAGCTCGACCTTTCATCATCACTTC
CGCTCGATGACCGCGCTGAGCCCCCTCCAGTACCAAAAGCACCTGCGACTGAACGAGGCACGGCGCCTGATGCTTACCGA
GCGGTTCGATGCCGCTACCGCGGCATTCCAGGTCGGCTATGAGAGCCCTTCGCAGTTCAGCCGCGAATACAGCCGGCTGT
TCGGAGCGCCCCCGCTGCGGGACATCGCGAGACTGCGTCAAAGTCCGGTCGCTGAATAG

Upstream 100 bases:

>100_bases
GTAGACCGATCCTGCCTGATTCTTGCCTGATCGCGCGACGGCTCGACAAAGGGGTTGAAGAAAGAAGGGAAGGTCCGTAG
GATGATACGCGGAGGTAGCG

Downstream 100 bases:

>100_bases
CCTGATCACCGCCAGGGGGCAGATCCGCCACGGTGTCGATGCTCCGGGTCAGTGGCGAACGATAAATCGGCCGGAGCCTT
TTCGGATCAATGGTCTGCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MQHRDDTDRIECCELTAALEGLVARIARWTETEERVTTAVPGLFLFRKEHPTEPMSGMYEPSICLVAQGAKRVLLGDDTY
VYDARNYLITSVHLPTVVQITEASPEQPYLGLSMRLDQREISQLMVDSNLPPPPPQQSTRGMATSDVTLPLLSAFHRLID
LLGEEKDIPILAPIIQREIIYRLLVGDQGARLRQIASAGSQSQQIARAIEWLKGNFTQPLRIDDLAEQARMSSSTFHHHF
RSMTALSPLQYQKHLRLNEARRLMLTERFDAATAAFQVGYESPSQFSREYSRLFGAPPLRDIARLRQSPVAE

Sequences:

>Translated_312_residues
MQHRDDTDRIECCELTAALEGLVARIARWTETEERVTTAVPGLFLFRKEHPTEPMSGMYEPSICLVAQGAKRVLLGDDTY
VYDARNYLITSVHLPTVVQITEASPEQPYLGLSMRLDQREISQLMVDSNLPPPPPQQSTRGMATSDVTLPLLSAFHRLID
LLGEEKDIPILAPIIQREIIYRLLVGDQGARLRQIASAGSQSQQIARAIEWLKGNFTQPLRIDDLAEQARMSSSTFHHHF
RSMTALSPLQYQKHLRLNEARRLMLTERFDAATAAFQVGYESPSQFSREYSRLFGAPPLRDIARLRQSPVAE
>Mature_312_residues
MQHRDDTDRIECCELTAALEGLVARIARWTETEERVTTAVPGLFLFRKEHPTEPMSGMYEPSICLVAQGAKRVLLGDDTY
VYDARNYLITSVHLPTVVQITEASPEQPYLGLSMRLDQREISQLMVDSNLPPPPPQQSTRGMATSDVTLPLLSAFHRLID
LLGEEKDIPILAPIIQREIIYRLLVGDQGARLRQIASAGSQSQQIARAIEWLKGNFTQPLRIDDLAEQARMSSSTFHHHF
RSMTALSPLQYQKHLRLNEARRLMLTERFDAATAAFQVGYESPSQFSREYSRLFGAPPLRDIARLRQSPVAE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=302, Percent_Identity=34.1059602649007, Blast_Score=174, Evalue=6e-45,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35282; Mature: 35282

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRDDTDRIECCELTAALEGLVARIARWTETEERVTTAVPGLFLFRKEHPTEPMSGMYE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHEEECCCCCCCCCCCCC
PSICLVAQGAKRVLLGDDTYVYDARNYLITSVHLPTVVQITEASPEQPYLGLSMRLDQRE
CCEEEEECCCCEEEECCCCEEEECCCEEEEEECCCEEEEEECCCCCCCEECCEEECCHHH
ISQLMVDSNLPPPPPQQSTRGMATSDVTLPLLSAFHRLIDLLGEEKDIPILAPIIQREII
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
YRLLVGDQGARLRQIASAGSQSQQIARAIEWLKGNFTQPLRIDDLAEQARMSSSTFHHHF
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RSMTALSPLQYQKHLRLNEARRLMLTERFDAATAAFQVGYESPSQFSREYSRLFGAPPLR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
DIARLRQSPVAE
HHHHHHHCCCCC
>Mature Secondary Structure
MQHRDDTDRIECCELTAALEGLVARIARWTETEERVTTAVPGLFLFRKEHPTEPMSGMYE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHEEECCCCCCCCCCCCC
PSICLVAQGAKRVLLGDDTYVYDARNYLITSVHLPTVVQITEASPEQPYLGLSMRLDQRE
CCEEEEECCCCEEEECCCCEEEECCCEEEEEECCCEEEEEECCCCCCCEECCEEECCHHH
ISQLMVDSNLPPPPPQQSTRGMATSDVTLPLLSAFHRLIDLLGEEKDIPILAPIIQREII
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
YRLLVGDQGARLRQIASAGSQSQQIARAIEWLKGNFTQPLRIDDLAEQARMSSSTFHHHF
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RSMTALSPLQYQKHLRLNEARRLMLTERFDAATAAFQVGYESPSQFSREYSRLFGAPPLR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
DIARLRQSPVAE
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]