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The map label for this gene is ybaK [H]

Identifier: 39998178

GI number: 39998178

Start: 3393821

End: 3394303

Strand: Reverse

Name: ybaK [H]

Synonym: GSU3088

Alternate gene names: 39998178

Gene position: 3394303-3393821 (Counterclockwise)

Preceding gene: 39998179

Following gene: 39998177

Centisome position: 88.99

GC content: 60.46

Gene sequence:

>483_bases
ATGGCCAAGGACAAGGCGCCGGTTACTCCGGCCATACGTCAACTACGGGCCGCAGGTGTAACGTTTACGGACCACGTGTA
TGCCTATGAGGAAAAAGGCGGAACAGCCGTCTCCGCCCGGGAGCTCGGCGTGGACGAGCATTGCGTGGTGAAAACGCTCA
TTATGGAAGACGAGGCGAAACGGCCGCTCATCGTCCTGATGCACGGCGACCGGCAGGTCTCCACCAAGGAACTGGCGCGG
GTCATGGGTGTCAAAAGCGTGTCTCCTTGCTCCCCCGATACGGCAAACCGGCATTCGGGCTACCAGGTAGGTGGGACTTC
TCCCTTCGGCACGCGGCATGCCATGCCGGTTTATATGGAGGAGTCGATTCTCGGTCTCCCGAGGATATATATCAATGGCG
GCAAGCGTGGGTATCTGGTAGGACTCGACCCGTGCGAGGCGTGCCGCCTGCTTGATCCCATCCTCGTGCGGGTGGCCATC
TGA

Upstream 100 bases:

>100_bases
CGCCGGAAAAACCAGAGGCCGCGCCGGTCAGACCCGACGCGGCCTCGCTGTTTTTGTGCCGAGCCGTCCGACCCTGACCG
GCGGCACCGGGGAGGCTTTA

Downstream 100 bases:

>100_bases
CGTTCGGATCAACTGGGTGTCGCGGGAGGTGATCCATGGAACTGCGTGAGCGATTCCTGCGTGCGGCCGAAGCGCTGCGG
CGGGCCGAAGTGCTGGTCAT

Product: YbaK/EbsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAKDKAPVTPAIRQLRAAGVTFTDHVYAYEEKGGTAVSARELGVDEHCVVKTLIMEDEAKRPLIVLMHGDRQVSTKELAR
VMGVKSVSPCSPDTANRHSGYQVGGTSPFGTRHAMPVYMEESILGLPRIYINGGKRGYLVGLDPCEACRLLDPILVRVAI

Sequences:

>Translated_160_residues
MAKDKAPVTPAIRQLRAAGVTFTDHVYAYEEKGGTAVSARELGVDEHCVVKTLIMEDEAKRPLIVLMHGDRQVSTKELAR
VMGVKSVSPCSPDTANRHSGYQVGGTSPFGTRHAMPVYMEESILGLPRIYINGGKRGYLVGLDPCEACRLLDPILVRVAI
>Mature_159_residues
AKDKAPVTPAIRQLRAAGVTFTDHVYAYEEKGGTAVSARELGVDEHCVVKTLIMEDEAKRPLIVLMHGDRQVSTKELARV
MGVKSVSPCSPDTANRHSGYQVGGTSPFGTRHAMPVYMEESILGLPRIYINGGKRGYLVGLDPCEACRLLDPILVRVAI

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=29.2993630573248, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17391; Mature: 17260

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDKAPVTPAIRQLRAAGVTFTDHVYAYEEKGGTAVSARELGVDEHCVVKTLIMEDEAK
CCCCCCCCCHHHHHHHHCCCEEECCEEEEECCCCCEEEHHHCCCCCHHHHHHHHHCCCCC
RPLIVLMHGDRQVSTKELARVMGVKSVSPCSPDTANRHSGYQVGGTSPFGTRHAMPVYME
CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEC
ESILGLPRIYINGGKRGYLVGLDPCEACRLLDPILVRVAI
CCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
AKDKAPVTPAIRQLRAAGVTFTDHVYAYEEKGGTAVSARELGVDEHCVVKTLIMEDEAK
CCCCCCCCHHHHHHHHCCCEEECCEEEEECCCCCEEEHHHCCCCCHHHHHHHHHCCCCC
RPLIVLMHGDRQVSTKELARVMGVKSVSPCSPDTANRHSGYQVGGTSPFGTRHAMPVYME
CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEC
ESILGLPRIYINGGKRGYLVGLDPCEACRLLDPILVRVAI
CCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]