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The map label for this gene is fliC [H]

Identifier: 39998129

GI number: 39998129

Start: 3344677

End: 3345507

Strand: Reverse

Name: fliC [H]

Synonym: GSU3038

Alternate gene names: 39998129

Gene position: 3345507-3344677 (Counterclockwise)

Preceding gene: 39998131

Following gene: 39998128

Centisome position: 87.71

GC content: 65.34

Gene sequence:

>831_bases
ATGGCACTCACAGTCAACACCAACGTCGCATCCATCAACGCCCAGCGGAACCTCAACGTAACTCAGCTCGCACTCGGCAA
GTCCCTCGAGCGCCTCTCCTCCGGCTACCGGATCAACCGCGCCGGTGACGACGCCGCCGGTCTGGCCATCTCCGAGAACA
TGAGAGCCCAAGTCCGCTCCATGAACCAGGCCGTCCGTAACGCCAACGACGGCGTGTCGCTTGTGCAGACCGCTGAAGGC
GCGCTGAACGAGGTCAGCAACATCCTGGTCCGGATGAGGGAGCTCGCCACCCAGGCCGCTACCGGTACCGTTTCTTCCGA
GCAGCGTGGTTACATCGACTCCGAGTTCCAGGCCCTCAAGGGCGAGATCGACCGGATCGCCAGCTCCAGCGAGTTCAACG
GCGCCAAGCTGCTGGACGGCACCTCCGCCACCTACTCGTTCCAGGTCGGTTCCCGCAACACCGGCAATGACGTGATCTCC
GTCTCCATCAGCGCCGCCGGCGCCAGCTCCATCGGCGTGGGAACCGCCAGCGTCACCGGCAACAACGGTGCCGCCGCCAA
GGCCGCCCTCGACTCCATCGACTCGGCAATCGCGAACGTGTCGAGCATCCGTGGTACCCTGGGTGCGGTCCAGAACCGCC
TCCAGTCCACCATCAACAACCTCCAGGTGTCGGTGGAGAACCTCTCCGCCGCCGAATCCCGGATCCGCGACGTTGACGTT
GCTTCCGAGACCGCAGCCCTGACCCGTGCCCAGATCCTGACCCAGGCCGGCACCGCCATCCTGGCCCAGGCCAACCAGAC
CCCGCAGTCGGCCCTTTCGCTCCTGCGTTAA

Upstream 100 bases:

>100_bases
CCGCGTCGGGCCCGGGTGGGCGCCGGCAACGTCAAGGCTTTCGGCTCACACACCCAAGGGGTAAGGAAACCCCGAATCAC
ACTCAAGGAGGAAGTACACC

Downstream 100 bases:

>100_bases
TCCGACTGGCAGCTCAGGTCATGCAGAGGGAGGGAGGCTTTGCCTCCCTCCCTCTTTTTGTGCATGAGGCGTACGCTGTC
CCGCACCTACTTCTCCCGTA

Product: flagellin FliC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MALTVNTNVASINAQRNLNVTQLALGKSLERLSSGYRINRAGDDAAGLAISENMRAQVRSMNQAVRNANDGVSLVQTAEG
ALNEVSNILVRMRELATQAATGTVSSEQRGYIDSEFQALKGEIDRIASSSEFNGAKLLDGTSATYSFQVGSRNTGNDVIS
VSISAAGASSIGVGTASVTGNNGAAAKAALDSIDSAIANVSSIRGTLGAVQNRLQSTINNLQVSVENLSAAESRIRDVDV
ASETAALTRAQILTQAGTAILAQANQTPQSALSLLR

Sequences:

>Translated_276_residues
MALTVNTNVASINAQRNLNVTQLALGKSLERLSSGYRINRAGDDAAGLAISENMRAQVRSMNQAVRNANDGVSLVQTAEG
ALNEVSNILVRMRELATQAATGTVSSEQRGYIDSEFQALKGEIDRIASSSEFNGAKLLDGTSATYSFQVGSRNTGNDVIS
VSISAAGASSIGVGTASVTGNNGAAAKAALDSIDSAIANVSSIRGTLGAVQNRLQSTINNLQVSVENLSAAESRIRDVDV
ASETAALTRAQILTQAGTAILAQANQTPQSALSLLR
>Mature_275_residues
ALTVNTNVASINAQRNLNVTQLALGKSLERLSSGYRINRAGDDAAGLAISENMRAQVRSMNQAVRNANDGVSLVQTAEGA
LNEVSNILVRMRELATQAATGTVSSEQRGYIDSEFQALKGEIDRIASSSEFNGAKLLDGTSATYSFQVGSRNTGNDVISV
SISAAGASSIGVGTASVTGNNGAAAKAALDSIDSAIANVSSIRGTLGAVQNRLQSTINNLQVSVENLSAAESRIRDVDVA
SETAALTRAQILTQAGTAILAQANQTPQSALSLLR

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=182, Percent_Identity=42.8571428571429, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 28484; Mature: 28353

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTVNTNVASINAQRNLNVTQLALGKSLERLSSGYRINRAGDDAAGLAISENMRAQVRS
CEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHCEEEHHHHHHHHHH
MNQAVRNANDGVSLVQTAEGALNEVSNILVRMRELATQAATGTVSSEQRGYIDSEFQALK
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
GEIDRIASSSEFNGAKLLDGTSATYSFQVGSRNTGNDVISVSISAAGASSIGVGTASVTG
HHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEC
NNGAAAKAALDSIDSAIANVSSIRGTLGAVQNRLQSTINNLQVSVENLSAAESRIRDVDV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCH
ASETAALTRAQILTQAGTAILAQANQTPQSALSLLR
HHHHHHHHHHHHHHHHCHHEEEECCCCHHHHHHHCC
>Mature Secondary Structure 
ALTVNTNVASINAQRNLNVTQLALGKSLERLSSGYRINRAGDDAAGLAISENMRAQVRS
EEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHCEEEHHHHHHHHHH
MNQAVRNANDGVSLVQTAEGALNEVSNILVRMRELATQAATGTVSSEQRGYIDSEFQALK
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
GEIDRIASSSEFNGAKLLDGTSATYSFQVGSRNTGNDVISVSISAAGASSIGVGTASVTG
HHHHHHHCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEC
NNGAAAKAALDSIDSAIANVSSIRGTLGAVQNRLQSTINNLQVSVENLSAAESRIRDVDV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCH
ASETAALTRAQILTQAGTAILAQANQTPQSALSLLR
HHHHHHHHHHHHHHHHCHHEEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1479346; 11058132 [H]