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The map label for this gene is fliD [H]

Identifier: 39998128

GI number: 39998128

Start: 3342898

End: 3344307

Strand: Reverse

Name: fliD [H]

Synonym: GSU3037

Alternate gene names: 39998128

Gene position: 3344307-3342898 (Counterclockwise)

Preceding gene: 39998129

Following gene: 39998127

Centisome position: 87.68

GC content: 58.01

Gene sequence:

>1410_bases
ATGGCAAGTGTATCGTTTGGCGGATTGGCAACGGGACTGGACTCAAATACGCTCATTTCCCAGCTTATGTACCTGGAGCG
CGCACCCGAGCGGATCCTGGAGAGCAAGAAGAGCACGATCAGCAGTCAGATCGATGTCTATACTCAGGTCACGAACTTGC
TGAATTCGTTCAAGACCCTGGCTGCCGGGATGAATACCGCCACCGGTTTCATGGGCAAGACCACGTCAGTGGGGGACAGT
ACGGTCGCGACGGCCACATCGTCCAGCATCGCATCGCCGGGCAGCTTTAACCTGACGGTGAACTCCCTGGCAAAGAACGA
GCGGCAGGTTGTTGACCAGGGATATGCCTCGGCAGACGCGCTCAATTTCAAGACCGGCACCTTCACCATCAGCGGCGTGG
CCACTCCCATCACCATTGCCGAAGGCCAGAATTCCCTTCAGGGGATCGCCTCGGCCATCAATGCTTCCGGTGCGAACGTG
ACCGCGTCGATCATCAACGACGGTTCGGCGAATCCCTACCGGCTTGTTATCACCGGCAAGGACACGAACAATTACACCCT
GAACTTCTCGGGGCTCACCGGCGATCCGGCCAGCGGCTCCGCCTATACCACGCCCACCATCACCAAGTCGGGTCCGACCT
ACCAGGCGGGAGCGGCTGCCAGTTTCTCCGTAAACGGCATCGCCATTACCAAGACCTCCAACATCGTCACCGACGTAATC
CCGGGCGTGACTCTCACCCTGCTCAAGGAGGGGGGGGCAACCACTACGGTGACCGTGGGGAACGACACATCCGGCGTCAC
CAAGAAGATCAACGACTTTGTCGGCGCCTACAACGCAGCCATGTCGCAGATCAACAAGCAGTCCGAATACAATGCGACCA
CCAAGAAAGGAGGGGTCCTCTCCGGGGACTCTACCCTCCGCAGCGTGAAGACGCAGCTCCAGAACGTCCTGACCACTCCC
GTGGCAGGGATAACCGGCAAATACTCCACCCTGGCCGATATCGGCATTACTACCGACCGGTCCAACGGCACGCTCACCGT
TGACGCGACCAAGCTTGCCGATGCACTGGGCAGCAATTTCAACGATGTGGTGGAGCTCTTTACGAAAAACGGCGGCGTCT
CCAACCTGGACACGGAAAAATATGGCGTTGCCGAGCAATTCAGGAAGGTCATCGATCGCTTTACCCATGCCTACGAGGGG
CCGTCCTCCACTGCCAACGGCATCATTTCGAGTCGGGTGCGGGGGCTCAACGACACCATCAAGAGCATCGACGATCAGAT
CGATGCCATGGAAGTGAGGATGGAGCGCAAGGAAGAGGCCCTGAAGAAGCAGTTTACCGCCATGGAGACCCTTGTCAGCA
GTCTTACAACGCAGGGGAATTCGCTTATAAGTTACCTGTACGGGTCGTAG

Upstream 100 bases:

>100_bases
GGCCTGGAAGCGCCATACTCCTTCCCCGGAAGCGTTTTTTTGCCGTACTGTTCAAGGTGGAGCCGGTTTTGCATCTCCGG
TTCCCGAGGAGGAAACGCAC

Downstream 100 bases:

>100_bases
CGATCGCACGAGTCAACACCAGGAGGAACAGGAATGCTGACCCCTTTCAACCAGTATCAGAACACCCAGGTCGGGACTGC
CAGCCCGGAAAAGATCCTGA

Product: flagellar hook-associated protein 2

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MASVSFGGLATGLDSNTLISQLMYLERAPERILESKKSTISSQIDVYTQVTNLLNSFKTLAAGMNTATGFMGKTTSVGDS
TVATATSSSIASPGSFNLTVNSLAKNERQVVDQGYASADALNFKTGTFTISGVATPITIAEGQNSLQGIASAINASGANV
TASIINDGSANPYRLVITGKDTNNYTLNFSGLTGDPASGSAYTTPTITKSGPTYQAGAAASFSVNGIAITKTSNIVTDVI
PGVTLTLLKEGGATTTVTVGNDTSGVTKKINDFVGAYNAAMSQINKQSEYNATTKKGGVLSGDSTLRSVKTQLQNVLTTP
VAGITGKYSTLADIGITTDRSNGTLTVDATKLADALGSNFNDVVELFTKNGGVSNLDTEKYGVAEQFRKVIDRFTHAYEG
PSSTANGIISSRVRGLNDTIKSIDDQIDAMEVRMERKEEALKKQFTAMETLVSSLTTQGNSLISYLYGS

Sequences:

>Translated_469_residues
MASVSFGGLATGLDSNTLISQLMYLERAPERILESKKSTISSQIDVYTQVTNLLNSFKTLAAGMNTATGFMGKTTSVGDS
TVATATSSSIASPGSFNLTVNSLAKNERQVVDQGYASADALNFKTGTFTISGVATPITIAEGQNSLQGIASAINASGANV
TASIINDGSANPYRLVITGKDTNNYTLNFSGLTGDPASGSAYTTPTITKSGPTYQAGAAASFSVNGIAITKTSNIVTDVI
PGVTLTLLKEGGATTTVTVGNDTSGVTKKINDFVGAYNAAMSQINKQSEYNATTKKGGVLSGDSTLRSVKTQLQNVLTTP
VAGITGKYSTLADIGITTDRSNGTLTVDATKLADALGSNFNDVVELFTKNGGVSNLDTEKYGVAEQFRKVIDRFTHAYEG
PSSTANGIISSRVRGLNDTIKSIDDQIDAMEVRMERKEEALKKQFTAMETLVSSLTTQGNSLISYLYGS
>Mature_468_residues
ASVSFGGLATGLDSNTLISQLMYLERAPERILESKKSTISSQIDVYTQVTNLLNSFKTLAAGMNTATGFMGKTTSVGDST
VATATSSSIASPGSFNLTVNSLAKNERQVVDQGYASADALNFKTGTFTISGVATPITIAEGQNSLQGIASAINASGANVT
ASIINDGSANPYRLVITGKDTNNYTLNFSGLTGDPASGSAYTTPTITKSGPTYQAGAAASFSVNGIAITKTSNIVTDVIP
GVTLTLLKEGGATTTVTVGNDTSGVTKKINDFVGAYNAAMSQINKQSEYNATTKKGGVLSGDSTLRSVKTQLQNVLTTPV
AGITGKYSTLADIGITTDRSNGTLTVDATKLADALGSNFNDVVELFTKNGGVSNLDTEKYGVAEQFRKVIDRFTHAYEGP
SSTANGIISSRVRGLNDTIKSIDDQIDAMEVRMERKEEALKKQFTAMETLVSSLTTQGNSLISYLYGS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=488, Percent_Identity=29.7131147540984, Blast_Score=137, Evalue=2e-33,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 48889; Mature: 48758

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVSFGGLATGLDSNTLISQLMYLERAPERILESKKSTISSQIDVYTQVTNLLNSFKTL
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGMNTATGFMGKTTSVGDSTVATATSSSIASPGSFNLTVNSLAKNERQVVDQGYASADA
HHCCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCC
LNFKTGTFTISGVATPITIAEGQNSLQGIASAINASGANVTASIINDGSANPYRLVITGK
EEECCCEEEEECCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEC
DTNNYTLNFSGLTGDPASGSAYTTPTITKSGPTYQAGAAASFSVNGIAITKTSNIVTDVI
CCCCEEEEECCCCCCCCCCCEECCCEEECCCCCCCCCCCCEEEECCEEEEECCCHHHHHH
PGVTLTLLKEGGATTTVTVGNDTSGVTKKINDFVGAYNAAMSQINKQSEYNATTKKGGVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SGDSTLRSVKTQLQNVLTTPVAGITGKYSTLADIGITTDRSNGTLTVDATKLADALGSNF
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCEEECCCCCEEEEEHHHHHHHHCCCH
NDVVELFTKNGGVSNLDTEKYGVAEQFRKVIDRFTHAYEGPSSTANGIISSRVRGLNDTI
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHH
KSIDDQIDAMEVRMERKEEALKKQFTAMETLVSSLTTQGNSLISYLYGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
ASVSFGGLATGLDSNTLISQLMYLERAPERILESKKSTISSQIDVYTQVTNLLNSFKTL
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGMNTATGFMGKTTSVGDSTVATATSSSIASPGSFNLTVNSLAKNERQVVDQGYASADA
HHCCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCC
LNFKTGTFTISGVATPITIAEGQNSLQGIASAINASGANVTASIINDGSANPYRLVITGK
EEECCCEEEEECCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEC
DTNNYTLNFSGLTGDPASGSAYTTPTITKSGPTYQAGAAASFSVNGIAITKTSNIVTDVI
CCCCEEEEECCCCCCCCCCCEECCCEEECCCCCCCCCCCCEEEECCEEEEECCCHHHHHH
PGVTLTLLKEGGATTTVTVGNDTSGVTKKINDFVGAYNAAMSQINKQSEYNATTKKGGVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SGDSTLRSVKTQLQNVLTTPVAGITGKYSTLADIGITTDRSNGTLTVDATKLADALGSNF
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCEEECCCCCEEEEEHHHHHHHHCCCH
NDVVELFTKNGGVSNLDTEKYGVAEQFRKVIDRFTHAYEGPSSTANGIISSRVRGLNDTI
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHH
KSIDDQIDAMEVRMERKEEALKKQFTAMETLVSSLTTQGNSLISYLYGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9488388; 10678962 [H]