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The map label for this gene is ytxD [H]

Identifier: 39998118

GI number: 39998118

Start: 3331289

End: 3332053

Strand: Direct

Name: ytxD [H]

Synonym: GSU3027

Alternate gene names: 39998118

Gene position: 3331289-3332053 (Clockwise)

Preceding gene: 39998117

Following gene: 39998119

Centisome position: 87.34

GC content: 59.08

Gene sequence:

>765_bases
ATGGACATAGCGACAATCATAGGCCTCGTCATGGGATTCGGGGCGGTGTTCGGCGGAGCGCTGCTGGAAGGTTTGCACCT
GACCGCCCTCATCCAGCCCACAGCGGCCATCATCGTGCTCGGGGGCACCTTCGGGGCGGCGTTCGTCAGCTTCCCCATGA
AGACGATCATTGGCGCGGCCAAGGATATCAAAAAGGTATTGATGCCGGCCCAGAACGACCCTGAAAAGGTCATCAAGGAC
CTGATCGGCTACGCGGCCAAGGCCCGGCGCAACGGCCTCATCTCTCTGGAGCAGGAAGCCCAGAACGTGAAGGATCCCTT
CACCAAGAAAGGGATATCCCTTGTCGTGGACGGCATCGACCCTCAGAAACTGCGGGAAACCCTGGAGATCGAGGTCACCT
ACTACGAAGAACACGCTAAGCAGAGCGCCGAGTTCTTCGAGGCGGCCGGCGGCTACGCCCCCACCATCGGTATCATCGGT
GCCGTGCTCGGTCTCATCCACGTCATGGGCAACCTGTCCGACTCCTCCAAACTGGGGGCAGGTATTGCCGTGGCCTTCGT
TGCGACCATTTACGGCCTCATGACCGCCAACATCATCTGTCTCCCCTTCGGCACAAAGATCAAGCACGGCATCAAGGAAG
AACTCATCTGCAAGAACATGATCATCGAAGGGCTCATCGCCATCCAGAACGGCGAGAACCCCCACTTCATCGAGCAGAAG
CTCAAGGCGTTCCTCCAGCACGGCGCCGGTGACAAGAAGGGATAG

Upstream 100 bases:

>100_bases
GCCGCAAGTATCTCCGGCGCAAGATGGAGGGAAGCTACCTCCCCCGCTGCCCCTTGAAACCGGGCCATAACACCGACTAA
CAGGAAAGGTCAGGCGACGT

Downstream 100 bases:

>100_bases
CATTCCGTCATGGCCAAGCCGAAGAAGCATGAGAAAGAACCCAACCACGAGCGGTGGCTCGTCTCCTACGCGGACTTCAT
CACTCTGCTGTTTGCCGTGT

Product: chemotaxis protein MotA

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDIATIIGLVMGFGAVFGGALLEGLHLTALIQPTAAIIVLGGTFGAAFVSFPMKTIIGAAKDIKKVLMPAQNDPEKVIKD
LIGYAAKARRNGLISLEQEAQNVKDPFTKKGISLVVDGIDPQKLRETLEIEVTYYEEHAKQSAEFFEAAGGYAPTIGIIG
AVLGLIHVMGNLSDSSKLGAGIAVAFVATIYGLMTANIICLPFGTKIKHGIKEELICKNMIIEGLIAIQNGENPHFIEQK
LKAFLQHGAGDKKG

Sequences:

>Translated_254_residues
MDIATIIGLVMGFGAVFGGALLEGLHLTALIQPTAAIIVLGGTFGAAFVSFPMKTIIGAAKDIKKVLMPAQNDPEKVIKD
LIGYAAKARRNGLISLEQEAQNVKDPFTKKGISLVVDGIDPQKLRETLEIEVTYYEEHAKQSAEFFEAAGGYAPTIGIIG
AVLGLIHVMGNLSDSSKLGAGIAVAFVATIYGLMTANIICLPFGTKIKHGIKEELICKNMIIEGLIAIQNGENPHFIEQK
LKAFLQHGAGDKKG
>Mature_254_residues
MDIATIIGLVMGFGAVFGGALLEGLHLTALIQPTAAIIVLGGTFGAAFVSFPMKTIIGAAKDIKKVLMPAQNDPEKVIKD
LIGYAAKARRNGLISLEQEAQNVKDPFTKKGISLVVDGIDPQKLRETLEIEVTYYEEHAKQSAEFFEAAGGYAPTIGIIG
AVLGLIHVMGNLSDSSKLGAGIAVAFVATIYGLMTANIICLPFGTKIKHGIKEELICKNMIIEGLIAIQNGENPHFIEQK
LKAFLQHGAGDKKG

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

Organism=Escherichia coli, GI1788199, Length=252, Percent_Identity=25.7936507936508, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 26957; Mature: 26957

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIATIIGLVMGFGAVFGGALLEGLHLTALIQPTAAIIVLGGTFGAAFVSFPMKTIIGAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
KDIKKVLMPAQNDPEKVIKDLIGYAAKARRNGLISLEQEAQNVKDPFTKKGISLVVDGID
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCCHHHCCCEEEEECCC
PQKLRETLEIEVTYYEEHAKQSAEFFEAAGGYAPTIGIIGAVLGLIHVMGNLSDSSKLGA
HHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
GIAVAFVATIYGLMTANIICLPFGTKIKHGIKEELICKNMIIEGLIAIQNGENPHFIEQK
HHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHH
LKAFLQHGAGDKKG
HHHHHHHCCCCCCC
>Mature Secondary Structure
MDIATIIGLVMGFGAVFGGALLEGLHLTALIQPTAAIIVLGGTFGAAFVSFPMKTIIGAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
KDIKKVLMPAQNDPEKVIKDLIGYAAKARRNGLISLEQEAQNVKDPFTKKGISLVVDGID
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCCHHHCCCEEEEECCC
PQKLRETLEIEVTYYEEHAKQSAEFFEAAGGYAPTIGIIGAVLGLIHVMGNLSDSSKLGA
HHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
GIAVAFVATIYGLMTANIICLPFGTKIKHGIKEELICKNMIIEGLIAIQNGENPHFIEQK
HHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHH
LKAFLQHGAGDKKG
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]