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The map label for this gene is abaB [H]

Identifier: 39998032

GI number: 39998032

Start: 3237885

End: 3238820

Strand: Direct

Name: abaB [H]

Synonym: GSU2941

Alternate gene names: 39998032

Gene position: 3237885-3238820 (Clockwise)

Preceding gene: 39998022

Following gene: 39998033

Centisome position: 84.89

GC content: 59.62

Gene sequence:

>936_bases
ATGGATTTGATCCTTCTTAATACTTTTATAAAGGTCGCGACCATCGGCAGCATCTCAAAGGCTGCAGGGCTGCTTTGCGT
CACCCAGTCCGCGGTTTCGCGACGCATCAAGTTGCTGGAAGAACACTACGGCCGCCCCCTCCTGGAGCGTACCGGAACCA
CGCTGAGACCCACCCCTGCCGGAAAAATGCTGATCGAAAAGGCCAAGTCGATCCTTGACATCGAGCGCCAAATTCTCGAC
AGCCTTGGTGTCAAGGAAACGAGGCAGAAGATATCCTTCTGCTGCACCCCGTCCTTCGGCATCGGCAGCCTTCCGGCAAT
CCTCGACTCCTTTCTGGCCGACAAAGGGGAGAAAACAGATCTCAAGTTCGTTTTCGCCATGCCCGAGGAGGCTCTTGACG
GGATCAGAAGCGGCAGGTTCGATCTCGCCCTCATCGAGCACTGCGACGATCTTGACCTGAACGGCTACCGGACGTATCCG
CTCCCCCCCGACGAGATGATCTTCATCAGCGCCCCCGCGCGCGGCATCGACATGCCTGCACCGGACATCGACCGGTTGCT
GGGGGAGCGGCTCTACCTCAAGAACGAAACCGGTTGCGCCAAACGTTTTCTCGACCGGAACATGCGCTCCATCGGGCGCG
ACGGCAACGAGTTCGTCAACACCGTATACTTTGACGACTGCCCGTTCATCCTCAGCCAGGTACGCGCCGGCAACGGCATC
GCCTTTGTCTCGGCAACGATCGTTCAGGCCGAGCTTCGCGCCGGCACACTGCGCGCACACCGGATCGCCGGATTCGACCC
GTTCCGTCCCCGCACCATTGTATTCAGCCCGCACATGGAGTGTTCTCCCGCTATTCACGCCTTCACTGAAACGCTCTTTG
CAGCCCACGACATCCCCTCCTCCGCTGCCCTGTTCTCCTCCCGGCGCACCCGGTAA

Upstream 100 bases:

>100_bases
CATCTTGAACTATATCGTCGTTTTTGTAATAACTTGAAGTGAAACATTTTCATAACAGCCATGCGCAACACGCATAACAT
CCATAACTCACTATAAAACA

Downstream 100 bases:

>100_bases
GGCCGCCACCTTCCAGGCGATCTCAATTTTCCTTAAAGTTATTCGGGTATGCTCCGATACGCAACAACAGATAACCACAC
GCGACGTGTGTTCACGATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDLILLNTFIKVATIGSISKAAGLLCVTQSAVSRRIKLLEEHYGRPLLERTGTTLRPTPAGKMLIEKAKSILDIERQILD
SLGVKETRQKISFCCTPSFGIGSLPAILDSFLADKGEKTDLKFVFAMPEEALDGIRSGRFDLALIEHCDDLDLNGYRTYP
LPPDEMIFISAPARGIDMPAPDIDRLLGERLYLKNETGCAKRFLDRNMRSIGRDGNEFVNTVYFDDCPFILSQVRAGNGI
AFVSATIVQAELRAGTLRAHRIAGFDPFRPRTIVFSPHMECSPAIHAFTETLFAAHDIPSSAALFSSRRTR

Sequences:

>Translated_311_residues
MDLILLNTFIKVATIGSISKAAGLLCVTQSAVSRRIKLLEEHYGRPLLERTGTTLRPTPAGKMLIEKAKSILDIERQILD
SLGVKETRQKISFCCTPSFGIGSLPAILDSFLADKGEKTDLKFVFAMPEEALDGIRSGRFDLALIEHCDDLDLNGYRTYP
LPPDEMIFISAPARGIDMPAPDIDRLLGERLYLKNETGCAKRFLDRNMRSIGRDGNEFVNTVYFDDCPFILSQVRAGNGI
AFVSATIVQAELRAGTLRAHRIAGFDPFRPRTIVFSPHMECSPAIHAFTETLFAAHDIPSSAALFSSRRTR
>Mature_311_residues
MDLILLNTFIKVATIGSISKAAGLLCVTQSAVSRRIKLLEEHYGRPLLERTGTTLRPTPAGKMLIEKAKSILDIERQILD
SLGVKETRQKISFCCTPSFGIGSLPAILDSFLADKGEKTDLKFVFAMPEEALDGIRSGRFDLALIEHCDDLDLNGYRTYP
LPPDEMIFISAPARGIDMPAPDIDRLLGERLYLKNETGCAKRFLDRNMRSIGRDGNEFVNTVYFDDCPFILSQVRAGNGI
AFVSATIVQAELRAGTLRAHRIAGFDPFRPRTIVFSPHMECSPAIHAFTETLFAAHDIPSSAALFSSRRTR

Specific function: Putative regulator of secondary metabolism [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789506, Length=174, Percent_Identity=25.8620689655172, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34438; Mature: 34438

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLILLNTFIKVATIGSISKAAGLLCVTQSAVSRRIKLLEEHYGRPLLERTGTTLRPTPA
CCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
GKMLIEKAKSILDIERQILDSLGVKETRQKISFCCTPSFGIGSLPAILDSFLADKGEKTD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCCCC
LKFVFAMPEEALDGIRSGRFDLALIEHCDDLDLNGYRTYPLPPDEMIFISAPARGIDMPA
EEEEEECCHHHHHHHHCCCCEEHHHHCCCCCCCCCEECCCCCCCCEEEEECCCCCCCCCC
PDIDRLLGERLYLKNETGCAKRFLDRNMRSIGRDGNEFVNTVYFDDCPFILSQVRAGNGI
CHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCHHHHHEEEECCCHHHHHHHHCCCCE
AFVSATIVQAELRAGTLRAHRIAGFDPFRPRTIVFSPHMECSPAIHAFTETLFAAHDIPS
EEHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SAALFSSRRTR
HHHHHHHCCCC
>Mature Secondary Structure
MDLILLNTFIKVATIGSISKAAGLLCVTQSAVSRRIKLLEEHYGRPLLERTGTTLRPTPA
CCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
GKMLIEKAKSILDIERQILDSLGVKETRQKISFCCTPSFGIGSLPAILDSFLADKGEKTD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCCCC
LKFVFAMPEEALDGIRSGRFDLALIEHCDDLDLNGYRTYPLPPDEMIFISAPARGIDMPA
EEEEEECCHHHHHHHHCCCCEEHHHHCCCCCCCCCEECCCCCCCCEEEEECCCCCCCCCC
PDIDRLLGERLYLKNETGCAKRFLDRNMRSIGRDGNEFVNTVYFDDCPFILSQVRAGNGI
CHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCHHHHHEEEECCCHHHHHHHHCCCCE
AFVSATIVQAELRAGTLRAHRIAGFDPFRPRTIVFSPHMECSPAIHAFTETLFAAHDIPS
EEHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SAALFSSRRTR
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9037760 [H]