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The map label for this gene is ydfM [H]

Identifier: 39997707

GI number: 39997707

Start: 2882887

End: 2883777

Strand: Reverse

Name: ydfM [H]

Synonym: GSU2613

Alternate gene names: 39997707

Gene position: 2883777-2882887 (Counterclockwise)

Preceding gene: 39997708

Following gene: 39997706

Centisome position: 75.61

GC content: 61.62

Gene sequence:

>891_bases
GTGCTTCGTGAGGAACGGTTCGAACGGGCGGAGAAAGTCATTCACCTGGGATTCTGGGTCAATGCCGTCCTGATGGTCAT
GAAACTTGCGGCAGGGCACTTCGGCGGGTCGGAAGCGGTTTTTGCCGACGGCGTTGAGAGCGGCTGCGACTTCGTGGCGC
TCCTCTTTACCATGGTGGCGCTGCGGGTGGGGCGCAAGCCCTTCGACGCCAGACACCCCTACGGCCACGGCAAGGCGGAG
AACGTGGCGGCATTCGTCATCGCGCTGGTCATCGGCGGCGCCGGTATGTTCATCCTGGTGCAGTCGGTGCGCACCATCAT
GTCCCGCTCCTGGCAGACCCCCGATCTCATCGCGGTGGCTGCCGCCCTGCTGACCATCGTCATCAAGGAAGGGCTCTATC
GCTACAGCGTCGCGGCGGGGCGAAAGCTCGACAGTCCGGCGCTCCAGGCCGTTGCCATGGACCATCGCAAGGACGCCCTT
ACCTCTGTCGGAACCCTGGTGGGTGTTGTCGGCGCCTATGCCGGTTTCGGCATCATGGACCCGCTTGCAGCGGGACTCAC
CTCTCTCTTCATTTTCAAGATCGGGTACGAGACCTTCCGTAGCGCCCTCCACGACCTCATGGACGGCCAGCCGCCCGGCG
ACTTCATCCGGGCGGTCACTGATCTGGCCGAGGGGGTCGAGCACGTCCATGAAATACGGGGGCGCCGGTCGGGCCAGTAC
ATCATCATCGACCTCAAGCTCGACATGGACCCGGAGATGACGGTCAAACAATCCCACGATATCGCCACGTGTGTCAAAAA
ATTGATTTTCGAACGGTTCCCCAACGTGGGGGATGTCATGATCCACATCAATCCCCACGACGAGGAGCATGAGGATCTGA
TACGGCTTTAG

Upstream 100 bases:

>100_bases
GAGCGGGTGGACATTCTCTTTACGGCTGGCTGGAACAGCTGGAACGGCCGGCGAAAATTCCAGCTCACTCTGAAGGATCT
GAAACGATCGGGAGATGACC

Downstream 100 bases:

>100_bases
CAGGGAGGCGTTCGGACGCTGATGCGTCAGGACCCCTATCACCACAAGGAGGCAGCCATGGCAGAGACCCCCAAGAGTAT
CGCTGATCTGAAGGAAGCAT

Product: cation efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLREERFERAEKVIHLGFWVNAVLMVMKLAAGHFGGSEAVFADGVESGCDFVALLFTMVALRVGRKPFDARHPYGHGKAE
NVAAFVIALVIGGAGMFILVQSVRTIMSRSWQTPDLIAVAAALLTIVIKEGLYRYSVAAGRKLDSPALQAVAMDHRKDAL
TSVGTLVGVVGAYAGFGIMDPLAAGLTSLFIFKIGYETFRSALHDLMDGQPPGDFIRAVTDLAEGVEHVHEIRGRRSGQY
IIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINPHDEEHEDLIRL

Sequences:

>Translated_296_residues
MLREERFERAEKVIHLGFWVNAVLMVMKLAAGHFGGSEAVFADGVESGCDFVALLFTMVALRVGRKPFDARHPYGHGKAE
NVAAFVIALVIGGAGMFILVQSVRTIMSRSWQTPDLIAVAAALLTIVIKEGLYRYSVAAGRKLDSPALQAVAMDHRKDAL
TSVGTLVGVVGAYAGFGIMDPLAAGLTSLFIFKIGYETFRSALHDLMDGQPPGDFIRAVTDLAEGVEHVHEIRGRRSGQY
IIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINPHDEEHEDLIRL
>Mature_296_residues
MLREERFERAEKVIHLGFWVNAVLMVMKLAAGHFGGSEAVFADGVESGCDFVALLFTMVALRVGRKPFDARHPYGHGKAE
NVAAFVIALVIGGAGMFILVQSVRTIMSRSWQTPDLIAVAAALLTIVIKEGLYRYSVAAGRKLDSPALQAVAMDHRKDAL
TSVGTLVGVVGAYAGFGIMDPLAAGLTSLFIFKIGYETFRSALHDLMDGQPPGDFIRAVTDLAEGVEHVHEIRGRRSGQY
IIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINPHDEEHEDLIRL

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=271, Percent_Identity=28.0442804428044, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI72000060, Length=310, Percent_Identity=23.2258064516129, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI72000062, Length=310, Percent_Identity=23.2258064516129, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17553664, Length=324, Percent_Identity=22.5308641975309, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193210990, Length=307, Percent_Identity=23.1270358306189, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533508, Length=280, Percent_Identity=22.5, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115533506, Length=280, Percent_Identity=22.5, Blast_Score=68, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6325032, Length=230, Percent_Identity=26.5217391304348, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323831, Length=221, Percent_Identity=24.8868778280543, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 32470; Mature: 32470

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHCC
>Mature Secondary Structure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EEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]