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The map label for this gene is yjiM [H]

Identifier: 39997614

GI number: 39997614

Start: 2777649

End: 2778812

Strand: Reverse

Name: yjiM [H]

Synonym: GSU2519

Alternate gene names: 39997614

Gene position: 2778812-2777649 (Counterclockwise)

Preceding gene: 39997615

Following gene: 39997613

Centisome position: 72.86

GC content: 62.89

Gene sequence:

>1164_bases
ATGATACATTCAGAAACCTTTGCCGAGATTGCCACCCTCAAGGAGCGCAATCTCATCGCCCTCAAGGAGGCCAGGGAAGC
CGGCCGGCACGCGGTGGGCACCTACTGTCTCTTCTCGCCGACGGAATTGATTCTGGCGGCCGGCGCCATTCCCGTGTCGC
TCTGCGGCACGAGCCAGAAGCCGATCCCCGCGGCCGAGAAGGTGCTGCCCCGCAACCTCTGTCCGCTCATCAAGTCGAGC
TACGGGTTTGCCGTCACGGACACCTGTCCCTATTTTCACTTTGCCGACTTCCTCCTGGCAGAGACCACCTGCGACGGCAA
GAAAAAGATGTATGAGCTCCTGGGGGAGCTCAAGCCGATCCATGTGATGCAGCTTCCCCAGATCCAGGACGAGGCTGCCC
TGGACTACTGGCTCATGGAGATCGGTCGGCTCAAGACCCGGCTCGAACGGGAGTTCGGGGTGCGGATCACCGACAAGGCC
CTGACCGAAGCCATCCGACTCATGAACGAAGAACGCCGGTCCCTCCAGGCCCTCCAGGATGTCTGCAAGGCCATCCCGTC
CCCCATCAGCGGCCTCGACCTGCTGACCGTCCTTCACAACCGCGGCTTTTCCGTGGACCGGCGGGCAGCCATCGAGCTGG
TGGACCGGTTCGCGGCTGAGTTGCGGCAGATGGCCGCGGCGGGCATTTCCCCCTTCACCGAATCCACCCCGCGGATTCTG
CTCACCGGCGTGCCGGTGGGAGTCGGTTCGGAAAAGCTGATCCGGATCATCGAGGAGAGCGGCGCTTCGGTGGTCTGCCT
GGAGAGCTGCGGGGCTTACAAGAAGGTGGAGCAGGTGCGGGAGGGCGGCGACCCGCTTCGGGCCATCGCCGAACGGTACC
TGAAGGTGCCCTGCTCATGCATGTCGCCAAATACCGGCCGATTGGAGCTGGTGGAGCGCCTGACGCGCGAATTCCGCGTG
GACGGAGTCGTGGACCTGACCTGGCTCGGGTGCCATACCTATGCCGTCGAATCATCGGTCCTGAAGAAGCATCTCCAGCA
GCGGACCGGTTTGCCGTTCCTCCAGATCGAAACCGACTATTCGGAGTCGGACACGGGCCAGCTCAAGGTCCGGGTCGAGG
CATTCCTCGAAATTGTCCACCGTTCAATGAAGAGGACCGCCTAG

Upstream 100 bases:

>100_bases
GCACGTGCCGGAAGACCCCCAGATCGTGGGCGCCCTCGGCGCCGCCCTCATCGGCTGCAATGCGTAGCATGCCGGTCCGG
AAAGAGGCCATCCCGTCGCC

Downstream 100 bases:

>100_bases
GGCGGTCCCGGAAAAAAGGAGAATCGAATGAGAAAAGTAGTAGTGCTGGCAGCAATGATGGTGGTGGCCTTCGCGGTAGC
GGCGCTGGCGGCCGATTACC

Product: (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MIHSETFAEIATLKERNLIALKEAREAGRHAVGTYCLFSPTELILAAGAIPVSLCGTSQKPIPAAEKVLPRNLCPLIKSS
YGFAVTDTCPYFHFADFLLAETTCDGKKKMYELLGELKPIHVMQLPQIQDEAALDYWLMEIGRLKTRLEREFGVRITDKA
LTEAIRLMNEERRSLQALQDVCKAIPSPISGLDLLTVLHNRGFSVDRRAAIELVDRFAAELRQMAAAGISPFTESTPRIL
LTGVPVGVGSEKLIRIIEESGASVVCLESCGAYKKVEQVREGGDPLRAIAERYLKVPCSCMSPNTGRLELVERLTREFRV
DGVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDYSESDTGQLKVRVEAFLEIVHRSMKRTA

Sequences:

>Translated_387_residues
MIHSETFAEIATLKERNLIALKEAREAGRHAVGTYCLFSPTELILAAGAIPVSLCGTSQKPIPAAEKVLPRNLCPLIKSS
YGFAVTDTCPYFHFADFLLAETTCDGKKKMYELLGELKPIHVMQLPQIQDEAALDYWLMEIGRLKTRLEREFGVRITDKA
LTEAIRLMNEERRSLQALQDVCKAIPSPISGLDLLTVLHNRGFSVDRRAAIELVDRFAAELRQMAAAGISPFTESTPRIL
LTGVPVGVGSEKLIRIIEESGASVVCLESCGAYKKVEQVREGGDPLRAIAERYLKVPCSCMSPNTGRLELVERLTREFRV
DGVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDYSESDTGQLKVRVEAFLEIVHRSMKRTA
>Mature_387_residues
MIHSETFAEIATLKERNLIALKEAREAGRHAVGTYCLFSPTELILAAGAIPVSLCGTSQKPIPAAEKVLPRNLCPLIKSS
YGFAVTDTCPYFHFADFLLAETTCDGKKKMYELLGELKPIHVMQLPQIQDEAALDYWLMEIGRLKTRLEREFGVRITDKA
LTEAIRLMNEERRSLQALQDVCKAIPSPISGLDLLTVLHNRGFSVDRRAAIELVDRFAAELRQMAAAGISPFTESTPRIL
LTGVPVGVGSEKLIRIIEESGASVVCLESCGAYKKVEQVREGGDPLRAIAERYLKVPCSCMSPNTGRLELVERLTREFRV
DGVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDYSESDTGQLKVRVEAFLEIVHRSMKRTA

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=375, Percent_Identity=47.2, Blast_Score=359, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 43062; Mature: 43062

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSETFAEIATLKERNLIALKEAREAGRHAVGTYCLFSPTELILAAGAIPVSLCGTSQK
CCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHEEEECHHHHHHHCCCCEEEECCCCCC
PIPAAEKVLPRNLCPLIKSSYGFAVTDTCPYFHFADFLLAETTCDGKKKMYELLGELKPI
CCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCE
HVMQLPQIQDEAALDYWLMEIGRLKTRLEREFGVRITDKALTEAIRLMNEERRSLQALQD
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHH
VCKAIPSPISGLDLLTVLHNRGFSVDRRAAIELVDRFAAELRQMAAAGISPFTESTPRIL
HHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LTGVPVGVGSEKLIRIIEESGASVVCLESCGAYKKVEQVREGGDPLRAIAERYLKVPCSC
EEECCCCCCHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC
MSPNTGRLELVERLTREFRVDGVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDY
CCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
SESDTGQLKVRVEAFLEIVHRSMKRTA
CCCCCCEEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIHSETFAEIATLKERNLIALKEAREAGRHAVGTYCLFSPTELILAAGAIPVSLCGTSQK
CCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHEEEECHHHHHHHCCCCEEEECCCCCC
PIPAAEKVLPRNLCPLIKSSYGFAVTDTCPYFHFADFLLAETTCDGKKKMYELLGELKPI
CCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCE
HVMQLPQIQDEAALDYWLMEIGRLKTRLEREFGVRITDKALTEAIRLMNEERRSLQALQD
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHH
VCKAIPSPISGLDLLTVLHNRGFSVDRRAAIELVDRFAAELRQMAAAGISPFTESTPRIL
HHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LTGVPVGVGSEKLIRIIEESGASVVCLESCGAYKKVEQVREGGDPLRAIAERYLKVPCSC
EEECCCCCCHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC
MSPNTGRLELVERLTREFRVDGVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDY
CCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
SESDTGQLKVRVEAFLEIVHRSMKRTA
CCCCCCEEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]