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The map label for this gene is ykfC [H]

Identifier: 39997566

GI number: 39997566

Start: 2709108

End: 2710412

Strand: Reverse

Name: ykfC [H]

Synonym: GSU2471

Alternate gene names: 39997566

Gene position: 2710412-2709108 (Counterclockwise)

Preceding gene: 39997567

Following gene: 39997562

Centisome position: 71.06

GC content: 60.84

Gene sequence:

>1305_bases
ATGCCCGTGGAGCGCGTCATTGACCGGCCAACTCCGGAAGAGCACCTACTGGAGCGGATACTTGCCACAGAGAACATGGA
CCTGGCGTGGAAACGGGTGCGGGCCAACAAGGGCGCACCTGGCGTCGATGGTGTTACCATCGACGCGTTCCCCGAACGGT
TCCGGCCCCTCTGGGGCGATATCCGTGCATCGCTTGCAACAGGTACCTACCAACCACAGCCGGTCCTTCGAGTGGAAATA
CCCAAACCAACGGGCGGCACCCGCCCGCTGGGGATTCCCACCGTCCTTGACCGGCTGATCCAACAGGCAACAGCCCAGGT
GCTCACGCCGATCTTCGATCCGGAATTCTCCGCATCGAGTTTCGGGTTCCGCCCCGGCCGCTCGGCACACAATGCCGTGC
GGCAGCTGCGGGAGTATCTGCGGCAGGGCTACCGCATTGCCGTGGACATCGACCTTGCCAAGTTCTTCGACACGGTCAAT
CACGACCTCCTCATGACAATGGTGGGGAGGAGGGTCCGCGACAAGCGGGTTCTCACCCTGATCGGCAGGTATCTCAGAGC
CGGGGTGGAGGTTGACGGGCGGCTGGAAAAGACCCGCATGGGCGTACCCCAAGGGGGTCCGCTTTCCCCGCTTCTCGCCA
ACATCCTCCTCGACCACCTGGACAAGGAGCTTGAGAGCCGTGGCCACAAGTTCGTCCGTTACGCCGATGATTTCGTCATT
CTGGTGAAGAGCGAGCGTGCCGGCGAGCGGGTCATGGGGAGCGTCAGGAAGTATCTGACGAACAAACTCAAGCTCACGGT
CAACGAAGACAAGAGCAAAGTCGCCAGAAGCGGCGACTTGAGCTTTCTTGGCTTTGTCTTCAAGGGAACCAAAATCCTCT
GGTCTGACCAGGCGTACAAGGAGTTCCGGCGCCGGGTCAGGAAGTACACCGGCAGGAGTTGGTTCGTCTCCATGGAGTAC
CGACTGAACAAGCTGTCGACCTACCTCCGCGGCTGGATGGGGTACTTCGGCATTGCCGAAGCCTACCGTGACATCCCGGA
GATCGACGGCTGGATACGGCGGCGGGTGCGGCTGTGCTACTGGAAGCAGTGGCGGTGGTGCCGCACCAAGATTCGGAACC
TGCTCAAACTGGGTGTACAGCTTGGCACATCCATCAGAGCAGGGCTGAACCGCAACGGTCCGTGGGCCATGTCCCGCAGG
CTTGCCGCCCAGCACGGTATGACCAACCAGTGGCTGAAGGATCAAGGACTTGTATCTGTCAAAGAACTGTGGGTGAAGAT
CCATTACCCGGCCACGGCCCGGTAA

Upstream 100 bases:

>100_bases
TCACAGACAGCCGGGAAGCCTTACCCCGCCGAAGGGCCGAACGATGAAGAGGAGGTAAGCCCCAATGAGCTTTCACGACA
TACCGAACCCGACCGGGGGA

Downstream 100 bases:

>100_bases
CTTCGTCGAACCGCCCGGTGCGGACCCGCATGCCGGGTGGTGTGGGGGCTGGGGGGGTAAAACCCCCGGCTACCCGATTA
GGCATTTCTTTTCGTCAGCG

Product: group II intron, maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MPVERVIDRPTPEEHLLERILATENMDLAWKRVRANKGAPGVDGVTIDAFPERFRPLWGDIRASLATGTYQPQPVLRVEI
PKPTGGTRPLGIPTVLDRLIQQATAQVLTPIFDPEFSASSFGFRPGRSAHNAVRQLREYLRQGYRIAVDIDLAKFFDTVN
HDLLMTMVGRRVRDKRVLTLIGRYLRAGVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELESRGHKFVRYADDFVI
LVKSERAGERVMGSVRKYLTNKLKLTVNEDKSKVARSGDLSFLGFVFKGTKILWSDQAYKEFRRRVRKYTGRSWFVSMEY
RLNKLSTYLRGWMGYFGIAEAYRDIPEIDGWIRRRVRLCYWKQWRWCRTKIRNLLKLGVQLGTSIRAGLNRNGPWAMSRR
LAAQHGMTNQWLKDQGLVSVKELWVKIHYPATAR

Sequences:

>Translated_434_residues
MPVERVIDRPTPEEHLLERILATENMDLAWKRVRANKGAPGVDGVTIDAFPERFRPLWGDIRASLATGTYQPQPVLRVEI
PKPTGGTRPLGIPTVLDRLIQQATAQVLTPIFDPEFSASSFGFRPGRSAHNAVRQLREYLRQGYRIAVDIDLAKFFDTVN
HDLLMTMVGRRVRDKRVLTLIGRYLRAGVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELESRGHKFVRYADDFVI
LVKSERAGERVMGSVRKYLTNKLKLTVNEDKSKVARSGDLSFLGFVFKGTKILWSDQAYKEFRRRVRKYTGRSWFVSMEY
RLNKLSTYLRGWMGYFGIAEAYRDIPEIDGWIRRRVRLCYWKQWRWCRTKIRNLLKLGVQLGTSIRAGLNRNGPWAMSRR
LAAQHGMTNQWLKDQGLVSVKELWVKIHYPATAR
>Mature_433_residues
PVERVIDRPTPEEHLLERILATENMDLAWKRVRANKGAPGVDGVTIDAFPERFRPLWGDIRASLATGTYQPQPVLRVEIP
KPTGGTRPLGIPTVLDRLIQQATAQVLTPIFDPEFSASSFGFRPGRSAHNAVRQLREYLRQGYRIAVDIDLAKFFDTVNH
DLLMTMVGRRVRDKRVLTLIGRYLRAGVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELESRGHKFVRYADDFVIL
VKSERAGERVMGSVRKYLTNKLKLTVNEDKSKVARSGDLSFLGFVFKGTKILWSDQAYKEFRRRVRKYTGRSWFVSMEYR
LNKLSTYLRGWMGYFGIAEAYRDIPEIDGWIRRRVRLCYWKQWRWCRTKIRNLLKLGVQLGTSIRAGLNRNGPWAMSRRL
AAQHGMTNQWLKDQGLVSVKELWVKIHYPATAR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=376, Percent_Identity=27.3936170212766, Blast_Score=143, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6226520, Length=316, Percent_Identity=27.8481012658228, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 50035; Mature: 49904

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVERVIDRPTPEEHLLERILATENMDLAWKRVRANKGAPGVDGVTIDAFPERFRPLWGD
CCCHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHH
IRASLATGTYQPQPVLRVEIPKPTGGTRPLGIPTVLDRLIQQATAQVLTPIFDPEFSASS
HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FGFRPGRSAHNAVRQLREYLRQGYRIAVDIDLAKFFDTVNHDLLMTMVGRRVRDKRVLTL
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGRYLRAGVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELESRGHKFVRYADDFVI
HHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE
LVKSERAGERVMGSVRKYLTNKLKLTVNEDKSKVARSGDLSFLGFVFKGTKILWSDQAYK
EEECCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCHHHHHHHCCCEEEECCHHHH
EFRRRVRKYTGRSWFVSMEYRLNKLSTYLRGWMGYFGIAEAYRDIPEIDGWIRRRVRLCY
HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
WKQWRWCRTKIRNLLKLGVQLGTSIRAGLNRNGPWAMSRRLAAQHGMTNQWLKDQGLVSV
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCHHH
KELWVKIHYPATAR
HHHEEEEECCCCCC
>Mature Secondary Structure 
PVERVIDRPTPEEHLLERILATENMDLAWKRVRANKGAPGVDGVTIDAFPERFRPLWGD
CCHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHH
IRASLATGTYQPQPVLRVEIPKPTGGTRPLGIPTVLDRLIQQATAQVLTPIFDPEFSASS
HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FGFRPGRSAHNAVRQLREYLRQGYRIAVDIDLAKFFDTVNHDLLMTMVGRRVRDKRVLTL
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGRYLRAGVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELESRGHKFVRYADDFVI
HHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE
LVKSERAGERVMGSVRKYLTNKLKLTVNEDKSKVARSGDLSFLGFVFKGTKILWSDQAYK
EEECCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCHHHHHHHCCCEEEECCHHHH
EFRRRVRKYTGRSWFVSMEYRLNKLSTYLRGWMGYFGIAEAYRDIPEIDGWIRRRVRLCY
HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
WKQWRWCRTKIRNLLKLGVQLGTSIRAGLNRNGPWAMSRRLAAQHGMTNQWLKDQGLVSV
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCHHH
KELWVKIHYPATAR
HHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]