Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 39997499

GI number: 39997499

Start: 2639881

End: 2640645

Strand: Reverse

Name: yjcF [C]

Synonym: GSU2404

Alternate gene names: 39997499

Gene position: 2640645-2639881 (Counterclockwise)

Preceding gene: 39997500

Following gene: 39997498

Centisome position: 69.23

GC content: 54.51

Gene sequence:

>765_bases
ATGTTCAACAAACTGGCGACATCAGTTGCATTCGGTCTTTTGAGCATTGCTACGGCCCACGCATTCGACCCCCTGGTGAT
CGAACGCGCCAAATCGCTTGGAGAGTGCGAGCATTGTGACTTTGTGAGTGCAGACTTGAAGGGGGTTGATCTCAAGGGAA
TAAAGCTGGACGAATCCAACTTCACCGGGGCTGACCTGAGTGCAGCCGCAATTGATGACTGTGGCGCGTGCAACTTCACC
GGCGCAAACCTGACCGGCGCGCAGATGGATGGTGCAAGCCTGGATGAGGCGATATTCGATACGGCCGACATGAGGTCGGC
ACATTGCAGCGGGGCATACATCCATCATGCGAAATTCGTTGGTGCAAATCTGTCGGGTGCCGACATGCGCAAGGTGAACG
TCGAAAAGGGCAATTTCAGTCAGGCAAACCTGACAAATGCGAATTTCTCGGGGGCGAAGCTCAAGTATGCCAATCTCGGC
GGTGCCGTGCTGAGGGGAACAAACTTCTCCTTTGCCGATCTTTCGGCAACCGATCTCGGCTCCCTGGACCTTGAAGGGGC
AAATTTTCGAGGAGCAACGTTCAATGGCACACTACTCAGGGATGCAAAACTGAAGGGAGCGGATTTACGGCAATCCAGGT
TTCACTCCGTGTCGATCTATGACACGGCAACCAACAGATTGGGGGAGAGCTTCGATCCGGTCAGGTGCGCCGATCTTCAG
GAAGCAGGAGCTCTCTTCGACGCAACGACGAAATGCGGGAAGTAG

Upstream 100 bases:

>100_bases
CGGGGAACCCCGGTTTATTTGTTGTCAGGCATTCCCCGGCTTGCCGTATGCAGATGATATAATTGACACGAATTTGATTC
CGCTTCCAAGGAGGCTTCCA

Downstream 100 bases:

>100_bases
AAAAGTGATCCGAGTGGCGGTGGTCTGCGATAACGGTTCTGCCGATGACCTGTGAGCAAGGCGCAACAGATCATCAGCGC
AGTGGGCGCACTTCTTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFNKLATSVAFGLLSIATAHAFDPLVIERAKSLGECEHCDFVSADLKGVDLKGIKLDESNFTGADLSAAAIDDCGACNFT
GANLTGAQMDGASLDEAIFDTADMRSAHCSGAYIHHAKFVGANLSGADMRKVNVEKGNFSQANLTNANFSGAKLKYANLG
GAVLRGTNFSFADLSATDLGSLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTATNRLGESFDPVRCADLQ
EAGALFDATTKCGK

Sequences:

>Translated_254_residues
MFNKLATSVAFGLLSIATAHAFDPLVIERAKSLGECEHCDFVSADLKGVDLKGIKLDESNFTGADLSAAAIDDCGACNFT
GANLTGAQMDGASLDEAIFDTADMRSAHCSGAYIHHAKFVGANLSGADMRKVNVEKGNFSQANLTNANFSGAKLKYANLG
GAVLRGTNFSFADLSATDLGSLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTATNRLGESFDPVRCADLQ
EAGALFDATTKCGK
>Mature_254_residues
MFNKLATSVAFGLLSIATAHAFDPLVIERAKSLGECEHCDFVSADLKGVDLKGIKLDESNFTGADLSAAAIDDCGACNFT
GANLTGAQMDGASLDEAIFDTADMRSAHCSGAYIHHAKFVGANLSGADMRKVNVEKGNFSQANLTNANFSGAKLKYANLG
GAVLRGTNFSFADLSATDLGSLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTATNRLGESFDPVRCADLQ
EAGALFDATTKCGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=179, Percent_Identity=33.5195530726257, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221377802, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 26685; Mature: 26685

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNKLATSVAFGLLSIATAHAFDPLVIERAKSLGECEHCDFVSADLKGVDLKGIKLDESN
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCC
FTGADLSAAAIDDCGACNFTGANLTGAQMDGASLDEAIFDTADMRSAHCSGAYIHHAKFV
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
GANLSGADMRKVNVEKGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFADLSATDLG
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEECCCCCCCC
SLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTATNRLGESFDPVRCADLQ
CEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCEEEEEECHHHHCCCCCCCCCCCCHH
EAGALFDATTKCGK
HHCCHHHHHHCCCC
>Mature Secondary Structure
MFNKLATSVAFGLLSIATAHAFDPLVIERAKSLGECEHCDFVSADLKGVDLKGIKLDESN
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCC
FTGADLSAAAIDDCGACNFTGANLTGAQMDGASLDEAIFDTADMRSAHCSGAYIHHAKFV
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
GANLSGADMRKVNVEKGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFADLSATDLG
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEECCCCCCCC
SLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTATNRLGESFDPVRCADLQ
CEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCEEEEEECHHHHCCCCCCCCCCCCHH
EAGALFDATTKCGK
HHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA