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The map label for this gene is bphB [H]

Identifier: 39997479

GI number: 39997479

Start: 2612913

End: 2614757

Strand: Reverse

Name: bphB [H]

Synonym: GSU2384

Alternate gene names: 39997479

Gene position: 2614757-2612913 (Counterclockwise)

Preceding gene: 39997480

Following gene: 39997478

Centisome position: 68.55

GC content: 64.88

Gene sequence:

>1845_bases
ATGGCGGAGCCGATTGTTGAGCGGGATCAGAACGCGTTCCACTTCCTTTTTCTGGAATTGCTGGAGAACGTGCTTAAGTT
GGCGGAGAATCCCGGCCGGTGCGGCGCGTATCTGACTGCCCAGATCCGCGAGCTGGTCGGGGTTCGGACCGTGGCGCTCC
TGCAGTGCGTCCCCAAAGCCCCCGAAGGGTGGCATGATCTGGTGAGCATCTGTCCCGAGAGGCGCCGGGGCGAGATCCCG
CCGGAGTCCCTCGAACAGCTGGCTTTCCTGAGTCACGAAATGGAGGGGCCGGAACTCTGGTCGCCGGCGGGCCCGCCGGA
TCGGGGGGGCGCGGTGCTGGCTGCCCTCGGCTACGGCGATTCGCTCATCCTTCCCCTCAACGTGGGGAGACAGCGGGTGG
GGGTGCTTCTGCTGCTCGACGTCATGGACCGGGCCGGCATCCAGACCATTACGGCATCACTGGAACGGCTCGCCACGGTC
CTCGCGCTGATCTTCCGCAATGCCGTCCTCTACCGCGACCTGGAGCGGCAGGTGGTGTCGCGGACCCACGACTTGCTCTG
GCGCGCGGAGGTTGATCGGGCACTGGCGGAACTCTATCCCTGCTTGATCTCCCCCGATGTCGACATTGAGGAGATCACCA
CCCGCATCCTGGAAGAGGCAATGGGGCTCACCGGGAGCGAGCAGGGCTTCGTGGCCACCATCGATCCGCTGTCGCGGACC
CTGGTGATCCATACGTTTTCCTCTATGATGGACTGCCTCTGGCAGGGGGGGGAGGAGGGGCGGAGAATCCTGTTTCCGCC
CGGCCAGGATGGTTCCTATCCGACCCTCTGGGGCCACTCGCTCAATACGAAATGTCCCTTCTACACCAATGATCCCGCCG
GCCATCCCAGCGCCGTGGGGGTACCGCACGGGCATATCCCGCTCCGGCACTTCCTGTCGGTGCCGGTCATGCTCGGCGAC
GAGGTGGTGGCCCAGATTTCCCTGGCCAATCCCGGCCGGGACTACACCGAGCGCGACCTGGAAGCCATCGGCCGCGTGGC
CAAGTTCTTCGCTCTGGCCATCCAGCGGATGCGGGCCGAGGAGTCGATCCGGGTTCTGAACACGGAGCTTGAGCGGAGGG
TTGAGGAGCGTACCAACCAGCTCACCGTGTCCAACCATGAGCTCGAATCGTTCTGCTACTCGGTCTCCCACGACCTGCGG
GCGCCCCTGCGCCATATCAACAGCTACGGAACCTTTCTGCTGGAAGATTACGGCTATCTGCTGGACGACCAGGGGCGCGA
GTACCTGGCGCGGCTCCAGGCCGCCACGCGCCGGATGGGCTCCATTATCGACGACCTGCTGACCCTGTCACGGGTCTCCC
GGACCGAGCTGACCGAAGAGGTAACGGACCTGAGCCGCCTGGCCCGCGACATCATCGATACCCTGCGGGAGACCGAACCC
GGGCGCTGGGTCGATGTCACGATCGAGGAGGGGCTGGCGGCCACCGGCGACCACACGCTGCTGCCGCTGCTGCTCCAGAA
TCTCCTGCAGAATGCCTGGAAATACACCTCGCGCGTCGAGCGCGCCGTTATCCGCTTCGGCCGGTGGTACCAGGAGGGTG
AGCCGGTCTTCTATGTGTCGGACAACGGCGCCGGCTTTGACATGACCCATGCCGACAAGCTCTTCAAGCCGTTCGAGCGC
CTCCATGCCGCCTCCGAATATGAGGGAACCGGCGTCGGCCTTGCCACGGTCCACCGGATCGTCCTCCGTCATGGCGGCCG
CATCTGGGCCGAGAGTGAGCCCGGTAAGGGGGCAACATTCTGTTTCACCTTGCCCGGCGCCTTTTCCACCTGCGCCGTTT
CTTGA

Upstream 100 bases:

>100_bases
GTGGAGCTGGAGAGAATCGGGCATTTCTTGGGGCTTCCCGTGACGGTGGAGGCGGTGGATGCCGCCGCGCTGGTCCGGGT
AGTGGAAGAGAGCACAGGCG

Downstream 100 bases:

>100_bases
CACCCCGTTGTTCCCCGTGCTAGTTTAACCCATTCTAAAAAGGGTCTTTTTTCGTTCCACCTCCCTTGCCGACCCGTTCC
GGAGCCTCCCGTGTATTTCC

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 613

Protein sequence:

>614_residues
MAEPIVERDQNAFHFLFLELLENVLKLAENPGRCGAYLTAQIRELVGVRTVALLQCVPKAPEGWHDLVSICPERRRGEIP
PESLEQLAFLSHEMEGPELWSPAGPPDRGGAVLAALGYGDSLILPLNVGRQRVGVLLLLDVMDRAGIQTITASLERLATV
LALIFRNAVLYRDLERQVVSRTHDLLWRAEVDRALAELYPCLISPDVDIEEITTRILEEAMGLTGSEQGFVATIDPLSRT
LVIHTFSSMMDCLWQGGEEGRRILFPPGQDGSYPTLWGHSLNTKCPFYTNDPAGHPSAVGVPHGHIPLRHFLSVPVMLGD
EVVAQISLANPGRDYTERDLEAIGRVAKFFALAIQRMRAEESIRVLNTELERRVEERTNQLTVSNHELESFCYSVSHDLR
APLRHINSYGTFLLEDYGYLLDDQGREYLARLQAATRRMGSIIDDLLTLSRVSRTELTEEVTDLSRLARDIIDTLRETEP
GRWVDVTIEEGLAATGDHTLLPLLLQNLLQNAWKYTSRVERAVIRFGRWYQEGEPVFYVSDNGAGFDMTHADKLFKPFER
LHAASEYEGTGVGLATVHRIVLRHGGRIWAESEPGKGATFCFTLPGAFSTCAVS

Sequences:

>Translated_614_residues
MAEPIVERDQNAFHFLFLELLENVLKLAENPGRCGAYLTAQIRELVGVRTVALLQCVPKAPEGWHDLVSICPERRRGEIP
PESLEQLAFLSHEMEGPELWSPAGPPDRGGAVLAALGYGDSLILPLNVGRQRVGVLLLLDVMDRAGIQTITASLERLATV
LALIFRNAVLYRDLERQVVSRTHDLLWRAEVDRALAELYPCLISPDVDIEEITTRILEEAMGLTGSEQGFVATIDPLSRT
LVIHTFSSMMDCLWQGGEEGRRILFPPGQDGSYPTLWGHSLNTKCPFYTNDPAGHPSAVGVPHGHIPLRHFLSVPVMLGD
EVVAQISLANPGRDYTERDLEAIGRVAKFFALAIQRMRAEESIRVLNTELERRVEERTNQLTVSNHELESFCYSVSHDLR
APLRHINSYGTFLLEDYGYLLDDQGREYLARLQAATRRMGSIIDDLLTLSRVSRTELTEEVTDLSRLARDIIDTLRETEP
GRWVDVTIEEGLAATGDHTLLPLLLQNLLQNAWKYTSRVERAVIRFGRWYQEGEPVFYVSDNGAGFDMTHADKLFKPFER
LHAASEYEGTGVGLATVHRIVLRHGGRIWAESEPGKGATFCFTLPGAFSTCAVS
>Mature_613_residues
AEPIVERDQNAFHFLFLELLENVLKLAENPGRCGAYLTAQIRELVGVRTVALLQCVPKAPEGWHDLVSICPERRRGEIPP
ESLEQLAFLSHEMEGPELWSPAGPPDRGGAVLAALGYGDSLILPLNVGRQRVGVLLLLDVMDRAGIQTITASLERLATVL
ALIFRNAVLYRDLERQVVSRTHDLLWRAEVDRALAELYPCLISPDVDIEEITTRILEEAMGLTGSEQGFVATIDPLSRTL
VIHTFSSMMDCLWQGGEEGRRILFPPGQDGSYPTLWGHSLNTKCPFYTNDPAGHPSAVGVPHGHIPLRHFLSVPVMLGDE
VVAQISLANPGRDYTERDLEAIGRVAKFFALAIQRMRAEESIRVLNTELERRVEERTNQLTVSNHELESFCYSVSHDLRA
PLRHINSYGTFLLEDYGYLLDDQGREYLARLQAATRRMGSIIDDLLTLSRVSRTELTEEVTDLSRLARDIIDTLRETEPG
RWVDVTIEEGLAATGDHTLLPLLLQNLLQNAWKYTSRVERAVIRFGRWYQEGEPVFYVSDNGAGFDMTHADKLFKPFERL
HAASEYEGTGVGLATVHRIVLRHGGRIWAESEPGKGATFCFTLPGAFSTCAVS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=222, Percent_Identity=31.981981981982, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI48994928, Length=226, Percent_Identity=28.7610619469027, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786600, Length=236, Percent_Identity=30.5084745762712, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1790346, Length=223, Percent_Identity=27.8026905829596, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787894, Length=242, Percent_Identity=28.099173553719, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081816, Length=293, Percent_Identity=24.9146757679181, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1790436, Length=233, Percent_Identity=26.6094420600858, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI145693157, Length=251, Percent_Identity=24.7011952191235, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786783, Length=263, Percent_Identity=25.0950570342205, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789808, Length=192, Percent_Identity=27.6041666666667, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1789149, Length=235, Percent_Identity=25.1063829787234, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 68597; Mature: 68466

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPIVERDQNAFHFLFLELLENVLKLAENPGRCGAYLTAQIRELVGVRTVALLQCVPKA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PEGWHDLVSICPERRRGEIPPESLEQLAFLSHEMEGPELWSPAGPPDRGGAVLAALGYGD
CCCHHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
SLILPLNVGRQRVGVLLLLDVMDRAGIQTITASLERLATVLALIFRNAVLYRDLERQVVS
EEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTHDLLWRAEVDRALAELYPCLISPDVDIEEITTRILEEAMGLTGSEQGFVATIDPLSRT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH
LVIHTFSSMMDCLWQGGEEGRRILFPPGQDGSYPTLWGHSLNTKCPFYTNDPAGHPSAVG
HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
VPHGHIPLRHFLSVPVMLGDEVVAQISLANPGRDYTERDLEAIGRVAKFFALAIQRMRAE
CCCCCCHHHHHHHCCHHCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ESIRVLNTELERRVEERTNQLTVSNHELESFCYSVSHDLRAPLRHINSYGTFLLEDYGYL
HHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LDDQGREYLARLQAATRRMGSIIDDLLTLSRVSRTELTEEVTDLSRLARDIIDTLRETEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GRWVDVTIEEGLAATGDHTLLPLLLQNLLQNAWKYTSRVERAVIRFGRWYQEGEPVFYVS
CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
DNGAGFDMTHADKLFKPFERLHAASEYEGTGVGLATVHRIVLRHGGRIWAESEPGKGATF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEE
CFTLPGAFSTCAVS
EEECCCCCCHHCCC
>Mature Secondary Structure 
AEPIVERDQNAFHFLFLELLENVLKLAENPGRCGAYLTAQIRELVGVRTVALLQCVPKA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PEGWHDLVSICPERRRGEIPPESLEQLAFLSHEMEGPELWSPAGPPDRGGAVLAALGYGD
CCCHHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
SLILPLNVGRQRVGVLLLLDVMDRAGIQTITASLERLATVLALIFRNAVLYRDLERQVVS
EEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTHDLLWRAEVDRALAELYPCLISPDVDIEEITTRILEEAMGLTGSEQGFVATIDPLSRT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH
LVIHTFSSMMDCLWQGGEEGRRILFPPGQDGSYPTLWGHSLNTKCPFYTNDPAGHPSAVG
HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
VPHGHIPLRHFLSVPVMLGDEVVAQISLANPGRDYTERDLEAIGRVAKFFALAIQRMRAE
CCCCCCHHHHHHHCCHHCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ESIRVLNTELERRVEERTNQLTVSNHELESFCYSVSHDLRAPLRHINSYGTFLLEDYGYL
HHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LDDQGREYLARLQAATRRMGSIIDDLLTLSRVSRTELTEEVTDLSRLARDIIDTLRETEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GRWVDVTIEEGLAATGDHTLLPLLLQNLLQNAWKYTSRVERAVIRFGRWYQEGEPVFYVS
CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
DNGAGFDMTHADKLFKPFERLHAASEYEGTGVGLATVHRIVLRHGGRIWAESEPGKGATF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEE
CFTLPGAFSTCAVS
EEECCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]