Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 39997386

GI number: 39997386

Start: 2505004

End: 2506566

Strand: Reverse

Name: bphB [H]

Synonym: GSU2288

Alternate gene names: 39997386

Gene position: 2506566-2505004 (Counterclockwise)

Preceding gene: 39997390

Following gene: 39997385

Centisome position: 65.72

GC content: 58.61

Gene sequence:

>1563_bases
ATGCGCTCTCCCCTTGCCATCGCCAAGGAAAAACTCTCGGCGAGGATTTTCCTCTCGTTCGGTCTCCTGTTCCTTGTCGT
GGTTTTCTTCTTTGCCGGTTTCTATCTCTTTGACCGTTGGCAATTGGCCCGCGAGGCATTCATGCGGGAGGGAACCTCTC
TTGCACGAGTGCTCGCCTTCAATGCCCGGATCGGTGTCGTTACCCACAATCAAGGGTTCATCAAGGGTGCCCTTGACGGG
GTGACCTCTTACGAAGGGGTGGTGTCTGCCGGGGTCTATTCCCCTGAAGGGAAGCCGATCCTCGAAGAGCGTGGAGCGCT
GGACAACGCATCTCCGCCGCGCCCACTACCGCCTGAAGCGAAGGGGGCGCTGAAAATGTCTCCCGGCCCCATCCGGTTCG
AAACAGCGACTTCCGTTGAATTCTGGGCGCCAATCATTCTGGAGGCGGGCAGCTTTTCCGAGGAGGAACTTTACTTCGGT
GCAAGCTCCCAGGATATTCACGAACGCACCATAGGTTTCGCCCGGGTGATCTTCGACAAGGGGAGCGTTACCAATGCCTT
CAGGTTTCTGGTGGTCAACAGCGTTCTGATTGCCCTGGCGGCAATTATTCTCTGGGGCATTCTCGCCTATGTCATCGGCC
GCAAGGTTACCCGGCCCCTCGATCGGCTAACGGACGGAGTCCGTGCATTGCGCGACGGCGATTTCAGAAAAGTCGACGTC
GTGACCTCCGACGAGGTGGGACGGTTGGCGGGCGCATTCAACGGGATGGTGACCGCCCTGGAACAGCGCGAAGCGGAACG
CAGCAAGGCCCAGGAGGCGATCAGCGCCCTCAATAACGAGCTGGAGCAGCGTGTCATCAGGCGAACAGCAGAACTTGAGA
AGGCCAACCGGGAGATGGAGTCGTTCAACTATTCGGTTTCCCATGACCTGCGCGCCCCGCTGGTAAGGCTCAAGGGATTC
TGCCTGGCGCTGGAAGAGGATTTCAGCGACAAGCTGGACAGCGCCGGCCGGTTCTATCTTGAGAGGATCATGTCCACCTG
CGACCAGATGGGGCGTGTCGTCGCCGCGATCATGAGCCTCACTCAGGTGAGCCGTGGCGAGCTCTGCCGTGAAAAGGTGA
ATCTGAGTGCCATGGTTGAACGCATCATTGCCGATCTGCGGGAGAGCGAGCCCCAGCGGCGCGTGGCCGTGATCATCGAG
CCCGGCGTCCACGTGGACGCCGATCCTCGCCTGGTTTCGGTGGTCCTCGACAATCTCGTGGGCAACGCCTGGAAGTTCAC
GGGGAGCAAGCCTGAAGGGCTCATCGAATTCGGGGCGGTTGCATCCGCCGAAGGGGCGTTTTTCATCCTCGACAATGGTG
CTGGATTCGATATGGCCTATGCCGAGCGGCTCTTCCGCCCCTTTGAACGTCTTCATGGCCATGACGAATTTCCCGGCACC
GGCGTGGGGCTTGCATTGGTTAAAAGAATTGTCGATCGCCATGGCGGTTATGTTAGAATCGACAGCAGTGAAGGAAAAGG
AACTATGGTTGTCTGCTCGTTCCAGTCTTCGGATATGGGTTGA

Upstream 100 bases:

>100_bases
GAAGATGCCTTCGTGCCGCCTCCGGCGGCCTTAATTGCCGGTCCCACATGCGTGTCGGCCTTTTCATAACGCTGCCTCGC
TCATGATACAGGCGGTCCCC

Downstream 100 bases:

>100_bases
GCGCGGTTTTTGCATCTAACGGGTAACAGGTGGAGAGGGGAGGACGTCATGGCTGGCACTGAAGAAATAACCATGCTGCT
TGTGGAGGATAATCCCGACG

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MRSPLAIAKEKLSARIFLSFGLLFLVVVFFFAGFYLFDRWQLAREAFMREGTSLARVLAFNARIGVVTHNQGFIKGALDG
VTSYEGVVSAGVYSPEGKPILEERGALDNASPPRPLPPEAKGALKMSPGPIRFETATSVEFWAPIILEAGSFSEEELYFG
ASSQDIHERTIGFARVIFDKGSVTNAFRFLVVNSVLIALAAIILWGILAYVIGRKVTRPLDRLTDGVRALRDGDFRKVDV
VTSDEVGRLAGAFNGMVTALEQREAERSKAQEAISALNNELEQRVIRRTAELEKANREMESFNYSVSHDLRAPLVRLKGF
CLALEEDFSDKLDSAGRFYLERIMSTCDQMGRVVAAIMSLTQVSRGELCREKVNLSAMVERIIADLRESEPQRRVAVIIE
PGVHVDADPRLVSVVLDNLVGNAWKFTGSKPEGLIEFGAVASAEGAFFILDNGAGFDMAYAERLFRPFERLHGHDEFPGT
GVGLALVKRIVDRHGGYVRIDSSEGKGTMVVCSFQSSDMG

Sequences:

>Translated_520_residues
MRSPLAIAKEKLSARIFLSFGLLFLVVVFFFAGFYLFDRWQLAREAFMREGTSLARVLAFNARIGVVTHNQGFIKGALDG
VTSYEGVVSAGVYSPEGKPILEERGALDNASPPRPLPPEAKGALKMSPGPIRFETATSVEFWAPIILEAGSFSEEELYFG
ASSQDIHERTIGFARVIFDKGSVTNAFRFLVVNSVLIALAAIILWGILAYVIGRKVTRPLDRLTDGVRALRDGDFRKVDV
VTSDEVGRLAGAFNGMVTALEQREAERSKAQEAISALNNELEQRVIRRTAELEKANREMESFNYSVSHDLRAPLVRLKGF
CLALEEDFSDKLDSAGRFYLERIMSTCDQMGRVVAAIMSLTQVSRGELCREKVNLSAMVERIIADLRESEPQRRVAVIIE
PGVHVDADPRLVSVVLDNLVGNAWKFTGSKPEGLIEFGAVASAEGAFFILDNGAGFDMAYAERLFRPFERLHGHDEFPGT
GVGLALVKRIVDRHGGYVRIDSSEGKGTMVVCSFQSSDMG
>Mature_520_residues
MRSPLAIAKEKLSARIFLSFGLLFLVVVFFFAGFYLFDRWQLAREAFMREGTSLARVLAFNARIGVVTHNQGFIKGALDG
VTSYEGVVSAGVYSPEGKPILEERGALDNASPPRPLPPEAKGALKMSPGPIRFETATSVEFWAPIILEAGSFSEEELYFG
ASSQDIHERTIGFARVIFDKGSVTNAFRFLVVNSVLIALAAIILWGILAYVIGRKVTRPLDRLTDGVRALRDGDFRKVDV
VTSDEVGRLAGAFNGMVTALEQREAERSKAQEAISALNNELEQRVIRRTAELEKANREMESFNYSVSHDLRAPLVRLKGF
CLALEEDFSDKLDSAGRFYLERIMSTCDQMGRVVAAIMSLTQVSRGELCREKVNLSAMVERIIADLRESEPQRRVAVIIE
PGVHVDADPRLVSVVLDNLVGNAWKFTGSKPEGLIEFGAVASAEGAFFILDNGAGFDMAYAERLFRPFERLHGHDEFPGT
GVGLALVKRIVDRHGGYVRIDSSEGKGTMVVCSFQSSDMG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=205, Percent_Identity=27.8048780487805, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081816, Length=348, Percent_Identity=27.8735632183908, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789149, Length=539, Percent_Identity=23.3766233766234, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790436, Length=209, Percent_Identity=28.2296650717703, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789808, Length=204, Percent_Identity=28.921568627451, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787894, Length=209, Percent_Identity=30.1435406698565, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786600, Length=235, Percent_Identity=30.6382978723404, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=27.9475982532751, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994928, Length=241, Percent_Identity=25.7261410788382, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788393, Length=295, Percent_Identity=25.0847457627119, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790861, Length=326, Percent_Identity=23.3128834355828, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790346, Length=229, Percent_Identity=25.3275109170306, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 57262; Mature: 57262

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPLAIAKEKLSARIFLSFGLLFLVVVFFFAGFYLFDRWQLAREAFMREGTSLARVLAF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NARIGVVTHNQGFIKGALDGVTSYEGVVSAGVYSPEGKPILEERGALDNASPPRPLPPEA
CCEEEEEECCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
KGALKMSPGPIRFETATSVEFWAPIILEAGSFSEEELYFGASSQDIHERTIGFARVIFDK
CCCEEECCCCEEEEECCCHHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
GSVTNAFRFLVVNSVLIALAAIILWGILAYVIGRKVTRPLDRLTDGVRALRDGDFRKVDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VTSDEVGRLAGAFNGMVTALEQREAERSKAQEAISALNNELEQRVIRRTAELEKANREME
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFNYSVSHDLRAPLVRLKGFCLALEEDFSDKLDSAGRFYLERIMSTCDQMGRVVAAIMSL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQVSRGELCREKVNLSAMVERIIADLRESEPQRRVAVIIEPGVHVDADPRLVSVVLDNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
GNAWKFTGSKPEGLIEFGAVASAEGAFFILDNGAGFDMAYAERLFRPFERLHGHDEFPGT
CCCEEECCCCCCCHHHHCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GVGLALVKRIVDRHGGYVRIDSSEGKGTMVVCSFQSSDMG
CHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MRSPLAIAKEKLSARIFLSFGLLFLVVVFFFAGFYLFDRWQLAREAFMREGTSLARVLAF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NARIGVVTHNQGFIKGALDGVTSYEGVVSAGVYSPEGKPILEERGALDNASPPRPLPPEA
CCEEEEEECCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
KGALKMSPGPIRFETATSVEFWAPIILEAGSFSEEELYFGASSQDIHERTIGFARVIFDK
CCCEEECCCCEEEEECCCHHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
GSVTNAFRFLVVNSVLIALAAIILWGILAYVIGRKVTRPLDRLTDGVRALRDGDFRKVDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VTSDEVGRLAGAFNGMVTALEQREAERSKAQEAISALNNELEQRVIRRTAELEKANREME
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFNYSVSHDLRAPLVRLKGFCLALEEDFSDKLDSAGRFYLERIMSTCDQMGRVVAAIMSL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQVSRGELCREKVNLSAMVERIIADLRESEPQRRVAVIIEPGVHVDADPRLVSVVLDNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
GNAWKFTGSKPEGLIEFGAVASAEGAFFILDNGAGFDMAYAERLFRPFERLHGHDEFPGT
CCCEEECCCCCCCHHHHCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GVGLALVKRIVDRHGGYVRIDSSEGKGTMVVCSFQSSDMG
CHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]