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The map label for this gene is omp85 [H]

Identifier: 39997366

GI number: 39997366

Start: 2483006

End: 2485303

Strand: Reverse

Name: omp85 [H]

Synonym: GSU2268

Alternate gene names: 39997366

Gene position: 2485303-2483006 (Counterclockwise)

Preceding gene: 39997367

Following gene: 39997365

Centisome position: 65.16

GC content: 59.27

Gene sequence:

>2298_bases
GTGCGACGGCTACAAGCGACTTCACTAGGAATCATTGCCGCAGTGGTGCTGAACGTTCAGGGTGTTCGGGCCGAGGGTGA
AAAAATCATCGATGTCCGGGTCAAGGGGAACCGGCGGGTCGAGACGGCTGCCATAACCAACGCCCTTTCTCTCAAAACGG
GCGATCTGCTCTACGCCGAAAAGGTGGACGCCGATGTGCGGGCTGTTTACAAGCTCGGGCAGTTCATCGACGTGCGGGCA
GAGACCGAGCAGGGCGATGGTGGAGTGGTCCTGGTCTATACGGTGCAGGAAAAGCCCATTATCCGCGAAGTCAGGATCGA
GGGTAACAAGGAGCTTTCCACCGACAAGGTGCGGGACGCCCTGGGACTCAAGGCGAACACCATCTTTTCCCAGAAGGAGT
TGACCCTGGCGGGCAAGCGGGTCAAGAAACTCTACGGGGATGAGGGCTATTACCTGGCCGAAGTCACCACCCGGAGCGAG
AAGCGTTCCGACACCGACGTGCGGGTGATTGTCTCGGTGGCCGAAGGGGAAAAGGTCCTGATCAAGTCGATCCGCTTCGA
GGGCAACAAGGCCTTCAACGCAAGCAAGCTTCGCGGAGTCATGGAGACCAAGGAGAAGTGGTTCCTCTCCTGGCTTACCG
GTGCCGGCACCTACAAAGACGAGGTGGTGAAGAACGATGCAAACCTCATCGCCGATCTCTACTTCAACAACGGCTACGTC
AACGTCAAGGTCGGAGAGCCCCAGGTGGCGCTCAACGAGGACAAAAGCGGCCTTATCGTAACCATCGGCATCACCGAGGG
GGATCAGTTCAGGACCGGCGCCATCGGCTACAAGGGGGATCTGCTGGAGAAGGAGGAGGACCTCACCAAGGTGCTCAGGC
TCAAGTCGGGGGATGTGTTCAGCCGGGCGAATCTCCGTACCGATGTTATGACGCTCACCGATCTTTACGCGGACAAGGGA
TTTGCCTTTGTCAACGTGACACCGCTCACCAAGGTGAACCCGGAAACGAAGACCGTGGACCTGACCTTCGAGTTCGAAAA
GGGGGAGAAGGTCTTCTTCGATCGCATCAACGTTAGCGGCAACACCAAGACCCGCGACAAGGTCATTCGCCGCGAGCTGA
AAGTGGCCGAGGGCGAAACCTACAGCAGCACGGGCCTGAAGCAGAGCAAGCAGCGCCTCATGAACCTCGGGTTCTTTGAG
GAAGCGGCAATCTCCACGGTTAAGGGGAGCGCCGAGAACAAGCTGGATGTGAATATCGAGGTGAAGGAGAAGCCCACCGG
CACCTTCAGCATCGGTGCCGGCTACAGTTCGCTTGACGGCCTTATCGGCCAGGGCTCCGTCTCCCAGGGCAACTTCCTTG
GGCTGGGCCTCAGGGCTAACCTGGCCGCCTCCATCGGCGGCAAATCGTCCACGTTCAACCTGGGTCTCACCGACCCCTAT
TTCCTCGATACCCGCTGGACTTTGGGGGGCGACCTTTACCGGACCGAGCGCGACTACCTCGACTTTACCCGCCGGGCAAC
GGGCGGCGACATCAAGGCGGGGTATCCTCTGAGCGATACTTTGAGAACCCTCTGGGTCTACAAGTACGAGCAGAAGGAAA
TCTTCGACATCTCACCGGCCCTGCGGGTCGTGCCCGAGACCAACTCCACTACCAGCTCCATCTATGTGAGCCTGACCAGG
GACACCACCGACTACCGTCTCGACCCCACGCGCGGCATGGTCAACAACCTCTCGGTCGAGTTCGCCGGTCTCGGCGGCAC
AAACCGGTTCCTCCGCTACTACGGCGATACTTCGGTCTTTTTCCCGACCGGTTTCGGGACGGTTCTGAGCCTGCGGGGTA
CCCTCGGTTACATCCAGGGGCTCGGCGGCAAGGACATTTCCATTGACGAGCGCTTCTTCGCCGGCGGCATCAATACTCTG
CGGGGATTTGAGGGCCGAAGTGTGAGCCCGTCCATTATCACCTATGTGCCGACCACCGACCCGCTGACCGGCCTCCCCAC
GACAAACCCCGAACGGGCATTTGTCGGCGGCGACAAGGAGGCGATCCTGAACGTGGAATACACGATTCCGCTCCTCAAGG
ATGCGGGCCTCAAAGGGGTTCTCTTCTTTGATGCGGGTAACGTGTACGGCGAGAACCAGGATATGTTCTCCAGTGTCCTG
ATGAGTTACGGTGCCGGTATCCGGTGGGTGTCTCCCATGGGACCGCTGCGGCTTGAGTACGGCATTCCGCTCAACCCCCG
CGACGGCATCGACAAGTCAAGCGGGCGTTTCGAATTTTCAATCGGGAGCTTTTTCTAG

Upstream 100 bases:

>100_bases
TGTCCGGCTGGTGGACGGCCGCATCGAGGTGTAGCACTCTTTCGTCTCAACAGGCAGCACGTAGGGCAGCGCAGTTAAAA
TCCACATTTCCGGGGTAGCG

Downstream 100 bases:

>100_bases
AACCTGCGGGTTTCAGAGCACCAGCTAAAGGAGAAACAATGAAAAGGATCATTGCAGCCACCGTCGTTACGTTGTCACTC
ATTGCCGCTTCCGCCTTCGG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 765

Protein sequence:

>765_residues
MRRLQATSLGIIAAVVLNVQGVRAEGEKIIDVRVKGNRRVETAAITNALSLKTGDLLYAEKVDADVRAVYKLGQFIDVRA
ETEQGDGGVVLVYTVQEKPIIREVRIEGNKELSTDKVRDALGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRSE
KRSDTDVRVIVSVAEGEKVLIKSIRFEGNKAFNASKLRGVMETKEKWFLSWLTGAGTYKDEVVKNDANLIADLYFNNGYV
NVKVGEPQVALNEDKSGLIVTIGITEGDQFRTGAIGYKGDLLEKEEDLTKVLRLKSGDVFSRANLRTDVMTLTDLYADKG
FAFVNVTPLTKVNPETKTVDLTFEFEKGEKVFFDRINVSGNTKTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFE
EAAISTVKGSAENKLDVNIEVKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLRANLAASIGGKSSTFNLGLTDPY
FLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTLRTLWVYKYEQKEIFDISPALRVVPETNSTTSSIYVSLTR
DTTDYRLDPTRGMVNNLSVEFAGLGGTNRFLRYYGDTSVFFPTGFGTVLSLRGTLGYIQGLGGKDISIDERFFAGGINTL
RGFEGRSVSPSIITYVPTTDPLTGLPTTNPERAFVGGDKEAILNVEYTIPLLKDAGLKGVLFFDAGNVYGENQDMFSSVL
MSYGAGIRWVSPMGPLRLEYGIPLNPRDGIDKSSGRFEFSIGSFF

Sequences:

>Translated_765_residues
MRRLQATSLGIIAAVVLNVQGVRAEGEKIIDVRVKGNRRVETAAITNALSLKTGDLLYAEKVDADVRAVYKLGQFIDVRA
ETEQGDGGVVLVYTVQEKPIIREVRIEGNKELSTDKVRDALGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRSE
KRSDTDVRVIVSVAEGEKVLIKSIRFEGNKAFNASKLRGVMETKEKWFLSWLTGAGTYKDEVVKNDANLIADLYFNNGYV
NVKVGEPQVALNEDKSGLIVTIGITEGDQFRTGAIGYKGDLLEKEEDLTKVLRLKSGDVFSRANLRTDVMTLTDLYADKG
FAFVNVTPLTKVNPETKTVDLTFEFEKGEKVFFDRINVSGNTKTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFE
EAAISTVKGSAENKLDVNIEVKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLRANLAASIGGKSSTFNLGLTDPY
FLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTLRTLWVYKYEQKEIFDISPALRVVPETNSTTSSIYVSLTR
DTTDYRLDPTRGMVNNLSVEFAGLGGTNRFLRYYGDTSVFFPTGFGTVLSLRGTLGYIQGLGGKDISIDERFFAGGINTL
RGFEGRSVSPSIITYVPTTDPLTGLPTTNPERAFVGGDKEAILNVEYTIPLLKDAGLKGVLFFDAGNVYGENQDMFSSVL
MSYGAGIRWVSPMGPLRLEYGIPLNPRDGIDKSSGRFEFSIGSFF
>Mature_765_residues
MRRLQATSLGIIAAVVLNVQGVRAEGEKIIDVRVKGNRRVETAAITNALSLKTGDLLYAEKVDADVRAVYKLGQFIDVRA
ETEQGDGGVVLVYTVQEKPIIREVRIEGNKELSTDKVRDALGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRSE
KRSDTDVRVIVSVAEGEKVLIKSIRFEGNKAFNASKLRGVMETKEKWFLSWLTGAGTYKDEVVKNDANLIADLYFNNGYV
NVKVGEPQVALNEDKSGLIVTIGITEGDQFRTGAIGYKGDLLEKEEDLTKVLRLKSGDVFSRANLRTDVMTLTDLYADKG
FAFVNVTPLTKVNPETKTVDLTFEFEKGEKVFFDRINVSGNTKTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFE
EAAISTVKGSAENKLDVNIEVKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLRANLAASIGGKSSTFNLGLTDPY
FLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTLRTLWVYKYEQKEIFDISPALRVVPETNSTTSSIYVSLTR
DTTDYRLDPTRGMVNNLSVEFAGLGGTNRFLRYYGDTSVFFPTGFGTVLSLRGTLGYIQGLGGKDISIDERFFAGGINTL
RGFEGRSVSPSIITYVPTTDPLTGLPTTNPERAFVGGDKEAILNVEYTIPLLKDAGLKGVLFFDAGNVYGENQDMFSSVL
MSYGAGIRWVSPMGPLRLEYGIPLNPRDGIDKSSGRFEFSIGSFF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=470, Percent_Identity=24.2553191489362, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI1786374, Length=822, Percent_Identity=27.2506082725061, Blast_Score=276, Evalue=3e-75,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 84148; Mature: 84148

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLQATSLGIIAAVVLNVQGVRAEGEKIIDVRVKGNRRVETAAITNALSLKTGDLLYAE
CCCCCHHHHHHHEEHHHCCCCCCCCCCEEEEEEECCCCEEEHHHHHEEEEECCCCEEEEE
KVDADVRAVYKLGQFIDVRAETEQGDGGVVLVYTVQEKPIIREVRIEGNKELSTDKVRDA
CCCHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHH
LGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRSEKRSDTDVRVIVSVAEGEKVL
HCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEE
IKSIRFEGNKAFNASKLRGVMETKEKWFLSWLTGAGTYKDEVVKNDANLIADLYFNNGYV
EEEEEECCCCCCCHHHHHHHHHHHHHHEEHHHCCCCCCHHHHHCCCCCEEEEEEECCCEE
NVKVGEPQVALNEDKSGLIVTIGITEGDQFRTGAIGYKGDLLEKEEDLTKVLRLKSGDVF
EEEECCCCEEECCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEE
SRANLRTDVMTLTDLYADKGFAFVNVTPLTKVNPETKTVDLTFEFEKGEKVFFDRINVSG
EECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCC
NTKTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFEEAAISTVKGSAENKLDVNIE
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEE
VKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLRANLAASIGGKSSTFNLGLTDPY
EECCCCCEEEECCCCHHHCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCEEEECCCCCE
FLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTLRTLWVYKYEQKEIFDISPA
EEEEEEECCCCEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHEEEEEEECCCEEEECCCC
LRVVPETNSTTSSIYVSLTRDTTDYRLDPTRGMVNNLSVEFAGLGGTNRFLRYYGDTSVF
EEEEECCCCCCEEEEEEEEECCCCEEECCCCCCHHCCEEEEEECCCCCCEEEEECCCEEE
FPTGFGTVLSLRGTLGYIQGLGGKDISIDERFFAGGINTLRGFEGRSVSPSIITYVPTTD
EECCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEEEECCCC
PLTGLPTTNPERAFVGGDKEAILNVEYTIPLLKDAGLKGVLFFDAGNVYGENQDMFSSVL
CCCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHH
MSYGAGIRWVSPMGPLRLEYGIPLNPRDGIDKSSGRFEFSIGSFF
HHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MRRLQATSLGIIAAVVLNVQGVRAEGEKIIDVRVKGNRRVETAAITNALSLKTGDLLYAE
CCCCCHHHHHHHEEHHHCCCCCCCCCCEEEEEEECCCCEEEHHHHHEEEEECCCCEEEEE
KVDADVRAVYKLGQFIDVRAETEQGDGGVVLVYTVQEKPIIREVRIEGNKELSTDKVRDA
CCCHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHH
LGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRSEKRSDTDVRVIVSVAEGEKVL
HCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEE
IKSIRFEGNKAFNASKLRGVMETKEKWFLSWLTGAGTYKDEVVKNDANLIADLYFNNGYV
EEEEEECCCCCCCHHHHHHHHHHHHHHEEHHHCCCCCCHHHHHCCCCCEEEEEEECCCEE
NVKVGEPQVALNEDKSGLIVTIGITEGDQFRTGAIGYKGDLLEKEEDLTKVLRLKSGDVF
EEEECCCCEEECCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEE
SRANLRTDVMTLTDLYADKGFAFVNVTPLTKVNPETKTVDLTFEFEKGEKVFFDRINVSG
EECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCC
NTKTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFEEAAISTVKGSAENKLDVNIE
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEE
VKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLRANLAASIGGKSSTFNLGLTDPY
EECCCCCEEEECCCCHHHCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCEEEECCCCCE
FLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTLRTLWVYKYEQKEIFDISPA
EEEEEEECCCCEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHEEEEEEECCCEEEECCCC
LRVVPETNSTTSSIYVSLTRDTTDYRLDPTRGMVNNLSVEFAGLGGTNRFLRYYGDTSVF
EEEEECCCCCCEEEEEEEEECCCCEEECCCCCCHHCCEEEEEECCCCCCEEEEECCCEEE
FPTGFGTVLSLRGTLGYIQGLGGKDISIDERFFAGGINTLRGFEGRSVSPSIITYVPTTD
EECCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEEEECCCC
PLTGLPTTNPERAFVGGDKEAILNVEYTIPLLKDAGLKGVLFFDAGNVYGENQDMFSSVL
CCCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHH
MSYGAGIRWVSPMGPLRLEYGIPLNPRDGIDKSSGRFEFSIGSFF
HHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]