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The map label for this gene is rfaQ [H]

Identifier: 39997350

GI number: 39997350

Start: 2467334

End: 2468446

Strand: Reverse

Name: rfaQ [H]

Synonym: GSU2252

Alternate gene names: 39997350

Gene position: 2468446-2467334 (Counterclockwise)

Preceding gene: 39997351

Following gene: 39997349

Centisome position: 64.72

GC content: 58.76

Gene sequence:

>1113_bases
GTGACCGCATCACCCTCCTCCATACTCATCATCAATATCCGGCTCATCGGCGATGTCATCCTGACCACGCCGCTCATCGG
CATCCTGAAAAATGCATTCCCTGACGCAGCCATCGACTTTCTGGTGAACCGGGGTACCGGCGAGTTTCTGGAAAAGGACC
CACGGGTCAGGCGGGTCATCTATTCGGAGAAGGGCTCGGTAGCTGCCGGTGGGGCGCGGGAAGGCGGCTACTTCCGGGAT
ATTTTCCGGAGGTATGACCTGGCAATCAATATGAACGCCTCGGATCGGGGAAGCTTTGCCGCTCTGCTGGCCGGGAAAAA
GACGAGGGTCGGTTTCACTCTCGGAGACAATTTTGGTCAGGCTTTATGGAAGAAAATGCTCTTTCATCGCCTCATCCCGC
TTCCCTGTCAGAATCATGTGGCTCTGCTGTGCAAGTCCGTCGCGGATGCACTCGGGCTGGCGGCAGACCGGCTCAGCGCA
TCTGTTCACTGGGATGCAGCCGACGCCGGGCGGGTGCGCCAGGTGTTGGAAAAAGCGAGACTCGACGGGGCCTACTTTGT
CATCCATCCCTTTGCACGCTGGCGTTACAAGCTCTGGACCATGGAAAAATTTGCCGAATTGAGCGACCGCGTTGCAGAGC
GTTACGGTTTGAGGCCGGTATGGACGGCCTCCCCATCGGCAGTGGAAGTATCGATGGTCCAGCAGGGGGCCGGGCTCTGC
CGCCATGCGCCTTTAGTGATAAAGGGGGAGTTTAGTCTTAATCAGATGGCGTGTCTTCTTTCAGGCGCATCCCTCTACAT
CGGTCTCGATACGGCGGTGACTCACATGGCGGCAGCAGCCGGCATCCCTCTCGTTGCCCTCTATGGCCCCACCGAATTGA
ATCGCTGGTTCCCTTGGGACAATCAAGGTCCCCTTGAGCAGGTGCCTCCGCTTTCAGGCGGCCGGATCATCGTTGTCCGT
AAGGAGGATCGGGAGTGTGTTCCGTGCGGGGAAGCGGGCTGTGGGGGAAGGGGAGAGGAGAGCGCCTGCATTCTCGAAAT
AGAGGTGGACGAAGTGATGGGTCGTGTCGATCAGGTCGTATCTGCCCGCTGCGCGGACCGGGAGTCGAAATGA

Upstream 100 bases:

>100_bases
GCCGGCCTGCGGCGAGCCTCCGACTTTGATGAAGCACGGGCAATCGAGGCACTTCTCGGCCATTTCAACGACGTCATCGC
CCGAAGGATCTGAACATATC

Downstream 100 bases:

>100_bases
ACCATAGGGTAAGACGCTGGCTGGTCGTTTCATATTTCTCGAAAATCGACGGGATGGCATGTGCGCAGCATGTGGATGAC
CGGCTCTCTTATCTCCTCGA

Product: heptosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MTASPSSILIINIRLIGDVILTTPLIGILKNAFPDAAIDFLVNRGTGEFLEKDPRVRRVIYSEKGSVAAGGAREGGYFRD
IFRRYDLAINMNASDRGSFAALLAGKKTRVGFTLGDNFGQALWKKMLFHRLIPLPCQNHVALLCKSVADALGLAADRLSA
SVHWDAADAGRVRQVLEKARLDGAYFVIHPFARWRYKLWTMEKFAELSDRVAERYGLRPVWTASPSAVEVSMVQQGAGLC
RHAPLVIKGEFSLNQMACLLSGASLYIGLDTAVTHMAAAAGIPLVALYGPTELNRWFPWDNQGPLEQVPPLSGGRIIVVR
KEDRECVPCGEAGCGGRGEESACILEIEVDEVMGRVDQVVSARCADRESK

Sequences:

>Translated_370_residues
MTASPSSILIINIRLIGDVILTTPLIGILKNAFPDAAIDFLVNRGTGEFLEKDPRVRRVIYSEKGSVAAGGAREGGYFRD
IFRRYDLAINMNASDRGSFAALLAGKKTRVGFTLGDNFGQALWKKMLFHRLIPLPCQNHVALLCKSVADALGLAADRLSA
SVHWDAADAGRVRQVLEKARLDGAYFVIHPFARWRYKLWTMEKFAELSDRVAERYGLRPVWTASPSAVEVSMVQQGAGLC
RHAPLVIKGEFSLNQMACLLSGASLYIGLDTAVTHMAAAAGIPLVALYGPTELNRWFPWDNQGPLEQVPPLSGGRIIVVR
KEDRECVPCGEAGCGGRGEESACILEIEVDEVMGRVDQVVSARCADRESK
>Mature_369_residues
TASPSSILIINIRLIGDVILTTPLIGILKNAFPDAAIDFLVNRGTGEFLEKDPRVRRVIYSEKGSVAAGGAREGGYFRDI
FRRYDLAINMNASDRGSFAALLAGKKTRVGFTLGDNFGQALWKKMLFHRLIPLPCQNHVALLCKSVADALGLAADRLSAS
VHWDAADAGRVRQVLEKARLDGAYFVIHPFARWRYKLWTMEKFAELSDRVAERYGLRPVWTASPSAVEVSMVQQGAGLCR
HAPLVIKGEFSLNQMACLLSGASLYIGLDTAVTHMAAAAGIPLVALYGPTELNRWFPWDNQGPLEQVPPLSGGRIIVVRK
EDRECVPCGEAGCGGRGEESACILEIEVDEVMGRVDQVVSARCADRESK

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=292, Percent_Identity=29.7945205479452, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40415; Mature: 40284

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASPSSILIINIRLIGDVILTTPLIGILKNAFPDAAIDFLVNRGTGEFLEKDPRVRRVI
CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCCHHHHHE
YSEKGSVAAGGAREGGYFRDIFRRYDLAINMNASDRGSFAALLAGKKTRVGFTLGDNFGQ
ECCCCCEECCCCCCCCHHHHHHHHHCEEEECCCCCCCCEEEEECCCCEEEEEEECCHHHH
ALWKKMLFHRLIPLPCQNHVALLCKSVADALGLAADRLSASVHWDAADAGRVRQVLEKAR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
LDGAYFVIHPFARWRYKLWTMEKFAELSDRVAERYGLRPVWTASPSAVEVSMVQQGAGLC
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEHHHHHHCCCHH
RHAPLVIKGEFSLNQMACLLSGASLYIGLDTAVTHMAAAAGIPLVALYGPTELNRWFPWD
HCCCEEEEECCCHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
NQGPLEQVPPLSGGRIIVVRKEDRECVPCGEAGCGGRGEESACILEIEVDEVMGRVDQVV
CCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
SARCADRESK
HHHHHCCCCC
>Mature Secondary Structure 
TASPSSILIINIRLIGDVILTTPLIGILKNAFPDAAIDFLVNRGTGEFLEKDPRVRRVI
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCCHHHHHE
YSEKGSVAAGGAREGGYFRDIFRRYDLAINMNASDRGSFAALLAGKKTRVGFTLGDNFGQ
ECCCCCEECCCCCCCCHHHHHHHHHCEEEECCCCCCCCEEEEECCCCEEEEEEECCHHHH
ALWKKMLFHRLIPLPCQNHVALLCKSVADALGLAADRLSASVHWDAADAGRVRQVLEKAR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
LDGAYFVIHPFARWRYKLWTMEKFAELSDRVAERYGLRPVWTASPSAVEVSMVQQGAGLC
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEHHHHHHCCCHH
RHAPLVIKGEFSLNQMACLLSGASLYIGLDTAVTHMAAAAGIPLVALYGPTELNRWFPWD
HCCCEEEEECCCHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
NQGPLEQVPPLSGGRIIVVRKEDRECVPCGEAGCGGRGEESACILEIEVDEVMGRVDQVV
CCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
SARCADRESK
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA