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The map label for this gene is rfaC [H]

Identifier: 39997340

GI number: 39997340

Start: 2456752

End: 2457819

Strand: Reverse

Name: rfaC [H]

Synonym: GSU2242

Alternate gene names: 39997340

Gene position: 2457819-2456752 (Counterclockwise)

Preceding gene: 308513313

Following gene: 39997339

Centisome position: 64.44

GC content: 63.67

Gene sequence:

>1068_bases
ATGCCGCTTCGTGTACTCATCGTCAAGGTATCCGCTCTGGGGGATGTGATCCATGCGCTGCCCGTCCTCGACTATCTCCA
CCAGGTTTCCCCCGGCATCGCGATCGACTGGGTGGTGGAGGAGGGGAACCGCGATATTCTTGAGGGACATCCGCTGCTGC
GCCGGCTCCATGTGGTCCGGACCAAGGCATGGCGGCGCGATCCGCTCTCCGACACCACGCGCACCCAGATCGCCACTGTA
CGGAGGGAGATGCGCGAAGCGGCCTACGATATCGCCTTCGATCTGCAGGGGAACATCAAGAGCGGTCTCATAGCGTGGCT
TTCCGATGCCCGGCGCCGCTACGGTTTCGACCGGGACGGTGTCCGGGAGTCGCTGAACCTGTACTTCACAACCAACCAGG
TGCCGCTCCGCCGCCAGGACCATCACATTTCCAGTCGCGCGCTCAGGGTGGTCAGCGTTCCCTTCGGCCGGGACTATGTC
GGAATGAAGCTGAGCACCGATATTTACACGTCGCCGGAGGATGACGAGGCAGCCGAGGTGTTTCTGGCAACCCTCGACGA
CGGCTTTGTCCTGCTCTTCCATAACGGCACCACCTGGACCACGAAGCTTTGGCACGAGGAAGGGTGGATCGCTCTGGGGA
CCAGGGCGCTCGACATGTTTCCCGATGCCACGATCCTCCTCTCCTGGGGCAACGAACAGGAGAAAAAGGCCGCCGAGGCC
ATTGCCGCGGGGATCGGCCGCAGGGTTCGGGTCCTGCCCAAGCTGACGCTCAAAGGGTTCTGCGCACTCCTCAAAAAGGT
TGACGTGGTGGTGGGGGGGGATACGGGGCCGGTCCACATGGCTGCCGCGGTGGGAACGCCCACGGTTTCCTTCTTCCGCG
CAACCGATGGCAGCCGCAACGGTCCCCGGGGTGATCAGCACGTGATCGTCCAATCTCCCCTCGACTGCACCGCCTGCCTG
CGCAAGTCGTGCGACAGGGATGCTCCCTGCCGCACCAGTATCACCGCTGACGCCCTCATGGGCGGGATCGCCCGGCTCCT
TGCGACCCCCTTTCCATCAACCGGGTGA

Upstream 100 bases:

>100_bases
TCCCTACGGCGACGGCCGGGCCGCCGGCCGGATCGCGGCCGCACTGGAGGCGTGGGGAACCGCCCGCTGTGCCGGCGCCT
CTGCCGATTGAGGTCCTGTC

Downstream 100 bases:

>100_bases
TGTGCTACACTGCACCTCTTTCGCAATCACGCGTTAAATCAAAAGGATAGCGTGCATGTCTTCGATACTCGTCACCGGAG
CAGCCGGGTTCATCGGTTTT

Product: heptosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MPLRVLIVKVSALGDVIHALPVLDYLHQVSPGIAIDWVVEEGNRDILEGHPLLRRLHVVRTKAWRRDPLSDTTRTQIATV
RREMREAAYDIAFDLQGNIKSGLIAWLSDARRRYGFDRDGVRESLNLYFTTNQVPLRRQDHHISSRALRVVSVPFGRDYV
GMKLSTDIYTSPEDDEAAEVFLATLDDGFVLLFHNGTTWTTKLWHEEGWIALGTRALDMFPDATILLSWGNEQEKKAAEA
IAAGIGRRVRVLPKLTLKGFCALLKKVDVVVGGDTGPVHMAAAVGTPTVSFFRATDGSRNGPRGDQHVIVQSPLDCTACL
RKSCDRDAPCRTSITADALMGGIARLLATPFPSTG

Sequences:

>Translated_355_residues
MPLRVLIVKVSALGDVIHALPVLDYLHQVSPGIAIDWVVEEGNRDILEGHPLLRRLHVVRTKAWRRDPLSDTTRTQIATV
RREMREAAYDIAFDLQGNIKSGLIAWLSDARRRYGFDRDGVRESLNLYFTTNQVPLRRQDHHISSRALRVVSVPFGRDYV
GMKLSTDIYTSPEDDEAAEVFLATLDDGFVLLFHNGTTWTTKLWHEEGWIALGTRALDMFPDATILLSWGNEQEKKAAEA
IAAGIGRRVRVLPKLTLKGFCALLKKVDVVVGGDTGPVHMAAAVGTPTVSFFRATDGSRNGPRGDQHVIVQSPLDCTACL
RKSCDRDAPCRTSITADALMGGIARLLATPFPSTG
>Mature_354_residues
PLRVLIVKVSALGDVIHALPVLDYLHQVSPGIAIDWVVEEGNRDILEGHPLLRRLHVVRTKAWRRDPLSDTTRTQIATVR
REMREAAYDIAFDLQGNIKSGLIAWLSDARRRYGFDRDGVRESLNLYFTTNQVPLRRQDHHISSRALRVVSVPFGRDYVG
MKLSTDIYTSPEDDEAAEVFLATLDDGFVLLFHNGTTWTTKLWHEEGWIALGTRALDMFPDATILLSWGNEQEKKAAEAI
AAGIGRRVRVLPKLTLKGFCALLKKVDVVVGGDTGPVHMAAAVGTPTVSFFRATDGSRNGPRGDQHVIVQSPLDCTACLR
KSCDRDAPCRTSITADALMGGIARLLATPFPSTG

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=330, Percent_Identity=30.9090909090909, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 39232; Mature: 39101

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRVLIVKVSALGDVIHALPVLDYLHQVSPGIAIDWVVEEGNRDILEGHPLLRRLHVVR
CCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
TKAWRRDPLSDTTRTQIATVRREMREAAYDIAFDLQGNIKSGLIAWLSDARRRYGFDRDG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
VRESLNLYFTTNQVPLRRQDHHISSRALRVVSVPFGRDYVGMKLSTDIYTSPEDDEAAEV
HHCCEEEEEEECCCCCCCCCCCHHHHEEEEEECCCCCCEECEEEECCCCCCCCCCCHHEE
FLATLDDGFVLLFHNGTTWTTKLWHEEGWIALGTRALDMFPDATILLSWGNEQEKKAAEA
EEEEECCCEEEEEECCCEEEEEEEECCCCEEECCCHHHCCCCCEEEEECCCHHHHHHHHH
IAAGIGRRVRVLPKLTLKGFCALLKKVDVVVGGDTGPVHMAAAVGTPTVSFFRATDGSRN
HHHHCCCEEEEHHHHHHHHHHHHHHHCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCC
GPRGDQHVIVQSPLDCTACLRKSCDRDAPCRTSITADALMGGIARLLATPFPSTG
CCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PLRVLIVKVSALGDVIHALPVLDYLHQVSPGIAIDWVVEEGNRDILEGHPLLRRLHVVR
CEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
TKAWRRDPLSDTTRTQIATVRREMREAAYDIAFDLQGNIKSGLIAWLSDARRRYGFDRDG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
VRESLNLYFTTNQVPLRRQDHHISSRALRVVSVPFGRDYVGMKLSTDIYTSPEDDEAAEV
HHCCEEEEEEECCCCCCCCCCCHHHHEEEEEECCCCCCEECEEEECCCCCCCCCCCHHEE
FLATLDDGFVLLFHNGTTWTTKLWHEEGWIALGTRALDMFPDATILLSWGNEQEKKAAEA
EEEEECCCEEEEEECCCEEEEEEEECCCCEEECCCHHHCCCCCEEEEECCCHHHHHHHHH
IAAGIGRRVRVLPKLTLKGFCALLKKVDVVVGGDTGPVHMAAAVGTPTVSFFRATDGSRN
HHHHCCCEEEEHHHHHHHHHHHHHHHCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCC
GPRGDQHVIVQSPLDCTACLRKSCDRDAPCRTSITADALMGGIARLLATPFPSTG
CCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]