| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is yciR [C]
Identifier: 39997114
GI number: 39997114
Start: 2208461
End: 2210860
Strand: Reverse
Name: yciR [C]
Synonym: GSU2016
Alternate gene names: 39997114
Gene position: 2210860-2208461 (Counterclockwise)
Preceding gene: 39997115
Following gene: 39997111
Centisome position: 57.96
GC content: 56.75
Gene sequence:
>2400_bases ATGGCCCAGACTTCATTGACCGGTTCACGTTGGCTCGATTCGGTGGCCCGGCGACTCAAGCATCTGCGCGAAGGTCTCAA GTCTCCGGAATCCGGGCGCTTGGAAGAGTTCAAGGCTCGCACCTTTCTCGTGGTCAAGTGTCGTTGGCTGCTCCTGACGC TTGTGGGCATCTACTGCCTTGTTGCGGGAAGTACGTATTATGTCAGTCGTATCGGTCTCTTTTTGTCACCCTCACAGGTG ATGTTCCTCGTGGTTACCGCGTCGACGGTGATTGCCTACAATCTTCTGCTTCATCTCTTTTACCAACGAATTATCTGTTG TTTCAGATTCATTAACGTCTTTCAGATTGTCCTCGACCTGCTTCTGGTGACGGTTCTCGTTCACCTCAGCGGTGGTGCCT CCAGTTGGTTCTGGCCGGTCTATCTCATTGTCACCATTGAAGCCGCATTTCTGATTGAGGGGAAGCGTGAAGTCTGGTTC GTGGGGGCGTTCGGCGGCATTCTCTACGGGGCATTGCTTGCCCTTGAGCATTTCGGCTTCATTCCAAACGTCCCCATGCC CTTTGTCGAGCCGGGGCTCCACCAGGATCCTCATTACATTCTTCTGGTCTGGCTCTGGGTGTCGCTGCTCAACGCGGCGG CAGCCGTCATAGGTTCCTATTTTGTATCGGTGATCGAGCGTGAGTCGGAAGCGACGAGGCAAAGCGAAGAGCGGCTCATG GGCTTCCTCGATACGGCCAACGATCTGATCCTGAGTTTTTCTCCCGAGGGCCGGCTTCGATACGTGAACGAGGCGTGGCA GCAGGTTCTCGGCTATACGGCAGAGGAGGCGAAGGAGCTTTCCTTCTTCGGCATCATTCATCCCGACAGCAGGGAGCGAT GCAATGCGGAACTGGAGCGGATTCTCGCAGGCGATGTGCTCAGTCCGCTCGAAGCAACACTGGTTGCCAAGGGAGGACGA TCCATCATTGTTGAGGGGAGCCTCACCTGTGGCGTCGATGGTGAAGGCTCCACCGCAGTGTGGGGCATCTGCCGGGACAT CACCGAGCGCAAGCAGGTGGAGGAACAGCTCTATCGTCTCGCCCATCATGACACACTGACTGGGCTTCCCAACCGCATCC TCTTCCTGGACCGCCTTCAGCAGGCAAAGGCCCATGCCAATCGATACCGGCATCATGTGGCGCTCATGTTTCTCGATCTG GACCGCTTCAAGATCATCAACGACACTCTCGGCCATCCAGTGGGCGACAAACTCCTGCAGGAAGTGGCGAAGCGCCTTGT GGACTGCGTGCGGGAGGTGGATACCGTGGCGCGCATCGGTGGCGACGAGTTCACCGTCGTGCTTGTGAACATCGATTCTG TCGAGGACGTGAAGCGGGTAGCCCAGAAGATACTCAAATCCCTGTCCGTTCCGTTTATGGTGGACAGCTTCGAGCTCTAC ATCACCACGAGCATCGGCATCGCCCTCTACCCCGGCGACGATGAAAATCCGGATAACCTGGTCAAGAAGGCCGACATCGC CATGTACCATGCAAAGGGGGAAGGGAGAAACACCTTCAAGTTCTACGTCCCCAAGATGGACGCCAACGCGGACAAGCGGC TGCTCCTTGAAACCAGTCTGCGCAAGGCGCTGGATAACGAAGAGTTCCGGGTTTACTATCAGCCCAAAGTCGATATCACG ACCAAGCAGATAACCGCCATGGAGGCCCTGCTGCGCTGGCAGCATCCGACGCTCGGCCTTGTGGCTCCGTCGGAATTCAT TCCTCTGGCCGAGGAGACGGGGCTCATCGTTCCCATCGGCGAATGGGTGCTGCGTGCCGCTTGTCTCCAGAATCGGAAGT GGCTCGAGATGGGGCTGCCGCCCATGAAGGTGGCAGTCAATCTGTCCGGTTATCAGTTCCAGCAGCCTAACCTGTTGGAT ATCATACGCACCGTGCTGGCTGATACCGGCCTTGACCCCGGACTTCTGGAACTGGAGATAACCGAGAGCGTCATCATGCA GAACCCGGATTTTGCCGTGGCGGTCCTGGCGGAAATCAGAGACCTGGGCATCCACATATCCATCGACGACTTCGGCACCG GTTACTCGTCTCTGGCCCACCTGAAGCGCTTCTCCATCAATACCCTGAAGATCGACAAATCGTTCGTGCGCGATGTGGAG ATCAATTCAGCCGACGCCGCCATCGCCACGGCGATCATTGCCATGGGGAACAGTCTCAACCTTAAGGTAATTGCCGAGGG AGTGGAAACCGAGGGACAGTTGACGTTTCTGTCCGAAAACAAGTGCGATGAGGTTCAGGGGTTTTTGTTCAGTACGCCCA TGCCTTCGGAGGATGTGGCCGATTTTCTTCGGGGCAGGACCACCTTGGTGGCGCCTGTCAGTCTGAACTCAGCCCCGTAA
Upstream 100 bases:
>100_bases TCTTCCGCCATGCAGCCGAGCTTGGCGCTATTGCGTCGGCTCCGGAAATTCGCCTGTTTTCTTGAGGATGGTTGGCATAT GAATTGCTGAATAAATATTC
Downstream 100 bases:
>100_bases CGAGCAGGTAGTCGTCGAGGATTTTTCGATGATCGAAACAGAGCGTGGCTGGGAGTTTGTTTGATGGAAAAACGGCGAGC CCGGCCGCGTCGTCGCCCGC
Product: sensory box/GGDEF family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MAQTSLTGSRWLDSVARRLKHLREGLKSPESGRLEEFKARTFLVVKCRWLLLTLVGIYCLVAGSTYYVSRIGLFLSPSQV MFLVVTASTVIAYNLLLHLFYQRIICCFRFINVFQIVLDLLLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEGKREVWF VGAFGGILYGALLALEHFGFIPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSVIERESEATRQSEERLM GFLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEEAKELSFFGIIHPDSRERCNAELERILAGDVLSPLEATLVAKGGR SIIVEGSLTCGVDGEGSTAVWGICRDITERKQVEEQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDL DRFKIINDTLGHPVGDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKRVAQKILKSLSVPFMVDSFELY ITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTFKFYVPKMDANADKRLLLETSLRKALDNEEFRVYYQPKVDIT TKQITAMEALLRWQHPTLGLVAPSEFIPLAEETGLIVPIGEWVLRAACLQNRKWLEMGLPPMKVAVNLSGYQFQQPNLLD IIRTVLADTGLDPGLLELEITESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSLAHLKRFSINTLKIDKSFVRDVE INSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLSENKCDEVQGFLFSTPMPSEDVADFLRGRTTLVAPVSLNSAP
Sequences:
>Translated_799_residues MAQTSLTGSRWLDSVARRLKHLREGLKSPESGRLEEFKARTFLVVKCRWLLLTLVGIYCLVAGSTYYVSRIGLFLSPSQV MFLVVTASTVIAYNLLLHLFYQRIICCFRFINVFQIVLDLLLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEGKREVWF VGAFGGILYGALLALEHFGFIPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSVIERESEATRQSEERLM GFLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEEAKELSFFGIIHPDSRERCNAELERILAGDVLSPLEATLVAKGGR SIIVEGSLTCGVDGEGSTAVWGICRDITERKQVEEQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDL DRFKIINDTLGHPVGDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKRVAQKILKSLSVPFMVDSFELY ITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTFKFYVPKMDANADKRLLLETSLRKALDNEEFRVYYQPKVDIT TKQITAMEALLRWQHPTLGLVAPSEFIPLAEETGLIVPIGEWVLRAACLQNRKWLEMGLPPMKVAVNLSGYQFQQPNLLD IIRTVLADTGLDPGLLELEITESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSLAHLKRFSINTLKIDKSFVRDVE INSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLSENKCDEVQGFLFSTPMPSEDVADFLRGRTTLVAPVSLNSAP >Mature_798_residues AQTSLTGSRWLDSVARRLKHLREGLKSPESGRLEEFKARTFLVVKCRWLLLTLVGIYCLVAGSTYYVSRIGLFLSPSQVM FLVVTASTVIAYNLLLHLFYQRIICCFRFINVFQIVLDLLLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEGKREVWFV GAFGGILYGALLALEHFGFIPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSVIERESEATRQSEERLMG FLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEEAKELSFFGIIHPDSRERCNAELERILAGDVLSPLEATLVAKGGRS IIVEGSLTCGVDGEGSTAVWGICRDITERKQVEEQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDLD RFKIINDTLGHPVGDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKRVAQKILKSLSVPFMVDSFELYI TTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTFKFYVPKMDANADKRLLLETSLRKALDNEEFRVYYQPKVDITT KQITAMEALLRWQHPTLGLVAPSEFIPLAEETGLIVPIGEWVLRAACLQNRKWLEMGLPPMKVAVNLSGYQFQQPNLLDI IRTVLADTGLDPGLLELEITESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSLAHLKRFSINTLKIDKSFVRDVEI NSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLSENKCDEVQGFLFSTPMPSEDVADFLRGRTTLVAPVSLNSAP
Specific function: Unknown
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MHYT domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=445, Percent_Identity=40, Blast_Score=347, Evalue=2e-96, Organism=Escherichia coli, GI87081921, Length=438, Percent_Identity=33.7899543378995, Blast_Score=253, Evalue=5e-68, Organism=Escherichia coli, GI226510982, Length=415, Percent_Identity=32.7710843373494, Blast_Score=224, Evalue=1e-59, Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=35.5648535564854, Blast_Score=149, Evalue=6e-37, Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.8775510204082, Blast_Score=146, Evalue=5e-36, Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=32.7935222672065, Blast_Score=143, Evalue=4e-35, Organism=Escherichia coli, GI1788381, Length=569, Percent_Identity=25.8347978910369, Blast_Score=139, Evalue=6e-34, Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=32.4110671936759, Blast_Score=139, Evalue=1e-33, Organism=Escherichia coli, GI87081845, Length=265, Percent_Identity=31.3207547169811, Blast_Score=132, Evalue=9e-32, Organism=Escherichia coli, GI1787055, Length=287, Percent_Identity=29.2682926829268, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI1786507, Length=264, Percent_Identity=30.6818181818182, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1788849, Length=255, Percent_Identity=32.156862745098, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI87082096, Length=423, Percent_Identity=25.0591016548463, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=39.010989010989, Blast_Score=109, Evalue=8e-25, Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=37.6543209876543, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=37.5, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=36.1963190184049, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.9285714285714, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=27.683615819209, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=34.375, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=31.4917127071823, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1789650, Length=488, Percent_Identity=20.0819672131148, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788085, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=25, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI87081974, Length=87, Percent_Identity=36.7816091954023, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]
EC number: NA
Molecular weight: Translated: 89223; Mature: 89092
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQTSLTGSRWLDSVARRLKHLREGLKSPESGRLEEFKARTFLVVKCRWLLLTLVGIYCL CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEHHHHHHHHHHHHHHHH VAGSTYYVSRIGLFLSPSQVMFLVVTASTVIAYNLLLHLFYQRIICCFRFINVFQIVLDL HCCCHHEEHHHHHEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEGKREVWFVGAFGGILYGALLALEHFGF HHHHHHHHCCCCCCCHHHHHHHHHEEHHHEEEECCCEEEEEECHHHHHHHHHHHHHHCCC IPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSVIERESEATRQSEERLM CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEEAKELSFFGIIHPDSRERCNAELER HHHCCCCCEEEEECCCCCEEHHHHHHHHHHCCCHHHHHCCEEEEEECCCCHHHHHHHHHH ILAGDVLSPLEATLVAKGGRSIIVEGSLTCGVDGEGSTAVWGICRDITERKQVEEQLYRL HHHHHHCCHHHHHHEECCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDLDRFKIINDTLGHPVGDKLLQ HHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHCCCCCHHHHHH EVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKRVAQKILKSLSVPFMVDSFELY HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECEEEE ITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTFKFYVPKMDANADKRLLLETSL EEEECCEEEECCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH RKALDNEEFRVYYQPKVDITTKQITAMEALLRWQHPTLGLVAPSEFIPLAEETGLIVPIG HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHCCCCHHHCCEEEEHH EWVLRAACLQNRKWLEMGLPPMKVAVNLSGYQFQQPNLLDIIRTVLADTGLDPGLLELEI HHHHHHHHHCCCCHHHHCCCCEEEEEEECCCEECCCCHHHHHHHHHHHCCCCCCEEEEEE TESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSLAHLKRFSINTLKIDKSFVRDVE HHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEEECHHHHHCCC INSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLSENKCDEVQGFLFSTPMPSEDVA CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCCCHHHCCEEECCCCCHHHHH DFLRGRTTLVAPVSLNSAP HHHCCCEEEEEEEECCCCC >Mature Secondary Structure AQTSLTGSRWLDSVARRLKHLREGLKSPESGRLEEFKARTFLVVKCRWLLLTLVGIYCL CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEHHHHHHHHHHHHHHHH VAGSTYYVSRIGLFLSPSQVMFLVVTASTVIAYNLLLHLFYQRIICCFRFINVFQIVLDL HCCCHHEEHHHHHEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEGKREVWFVGAFGGILYGALLALEHFGF HHHHHHHHCCCCCCCHHHHHHHHHEEHHHEEEECCCEEEEEECHHHHHHHHHHHHHHCCC IPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSVIERESEATRQSEERLM CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEEAKELSFFGIIHPDSRERCNAELER HHHCCCCCEEEEECCCCCEEHHHHHHHHHHCCCHHHHHCCEEEEEECCCCHHHHHHHHHH ILAGDVLSPLEATLVAKGGRSIIVEGSLTCGVDGEGSTAVWGICRDITERKQVEEQLYRL HHHHHHCCHHHHHHEECCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDLDRFKIINDTLGHPVGDKLLQ HHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHCCCCCHHHHHH EVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKRVAQKILKSLSVPFMVDSFELY HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECEEEE ITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTFKFYVPKMDANADKRLLLETSL EEEECCEEEECCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH RKALDNEEFRVYYQPKVDITTKQITAMEALLRWQHPTLGLVAPSEFIPLAEETGLIVPIG HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHCCCCHHHCCEEEEHH EWVLRAACLQNRKWLEMGLPPMKVAVNLSGYQFQQPNLLDIIRTVLADTGLDPGLLELEI HHHHHHHHHCCCCHHHHCCCCEEEEEEECCCEECCCCHHHHHHHHHHHCCCCCCEEEEEE TESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSLAHLKRFSINTLKIDKSFVRDVE HHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEEECHHHHHCCC INSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLSENKCDEVQGFLFSTPMPSEDVA CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCCCHHHCCEEECCCCCHHHHH DFLRGRTTLVAPVSLNSAP HHHCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]