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The map label for this gene is yigC [C]

Identifier: 39997102

GI number: 39997102

Start: 2196283

End: 2198121

Strand: Reverse

Name: yigC [C]

Synonym: GSU2004

Alternate gene names: 39997102

Gene position: 2198121-2196283 (Counterclockwise)

Preceding gene: 39997109

Following gene: 39997101

Centisome position: 57.63

GC content: 63.68

Gene sequence:

>1839_bases
ATGGGCTATCGCAATCTGCAGGAATGTGTGAAGGAGCTGGAACGGACCGGCCAGTTGATCCGGATCGACGTGGAAACCGA
TCCGTACCTCGAAATCGGCGCCATCCAGCGCCGCGTCTACCATGCGGAGGGGCCGGCCCTTCTGTTCACCCGGGCGAAGG
GGTGCCGCTTTCCCCTGTTGGGGAACCTGTTCGGCACCATGGACCGCACTACCTTCATCTTCCGAGACACCCTGCGCGTT
ATTGAACGTCTCGTGGCTCTCAAGATCAATCCCACGGCGTTTTTGAGGGACCCCCTTGGCCATCTCGGCATTCCCCGGGC
GGCACTCCACCTTCTGCCGCGCCACGTGTCGGACGGGCCGATTCTCGCCAATCACACAACCCTTGACCAACTCCCCTCCC
TGGTTTCCTGGCCCCGGGACGGTGGTCCCTTTGTGACGCTGCCCCAGGTTTATTCCGAAAGCCCGTCCCGTCCCGGCTTC
CGCTTCTCCAACCTGGGAATGTACCGCGTTCAACTTTCGGGGAACGAGTATGCGCCGAACCAGGAGGTCGGAATTCATTA
CCAGATCCATCGCGGCATCGGTGTCCACCATGCTGAGGCGATCGCCCGGGGTGAGCCCCTGAAGGTGAGCGTCTTCGTGG
GCGGGGCACCTTCAATGGCCGTGGCGGCAGTCATGCCGCTCCCCGAGGGGCTGCCGGAACTTTCCTTTGCCGGACTCCTG
GCCGGCCGCCGCATCGACATGATCTGCCGCCCCGACCGTCTTCCTCTTCCGGCCGAGGCGGATTTCGTCATCACCGGCAC
CATCGACCCGAACCGGACGCTCCCCGAGGGCCCCTTCGGCGATCACCTGGGGTATTACAGCCTCGCCCATCCGTTCCCGG
TTCTCACGGTCGAGAACGTGTACCATCGTGCCGACGCCATCTGGCCCTATACCACCGTCGGCCGCCCTCCCCAGGAGGAC
ACCACCTTCGGCGCCTTTATCCATGAGCTGACCGGCGCCCTGATCCCCGAAGTGCTTCCCGGCGTGAAGGCGGTTCATGC
CGTGGACGCGGCCGGGGTCCATCCCCTGCTGCTGGCCGTGGGCTCAGAACGCTACGTTCCCTATGAAGAGGAACGCACAC
CCCGGGAACTTCTCACCATTGCCAGCGCCATCCTGGGCAATGGTCAACTCTCTCTGGCAAAGTACCTCTTCATTGCTCCC
CATGAGGATGAGCCCCCCGACATCCACGACATTGACGGTTTTATCCGCTTTACCCTGGAGCGGGCCGACTGGCGCCGTGA
CCTTCACTTCCATACCCGCACCACCATCGACACACTCGATTATTCGGGTACAGGCCTGAACGAGGGGTCAAAGGTCATCG
TGGCGGCGGCAGGTTCTCCCAGGCGCGAGCTGCCCGGCGAGCTGCCCGTCGGGCTGCGCCTTCCCGACGGGTTTAGCGCG
CCCCGGGTCTGCTTCCCCGGCGTTCTGGCAGTGCAAGGCCCCGCCTTCCCCGGCTACCGCGACTGCGTTACCCCGGACAT
GGAGCGCTTCTGCGCCGGCATTTCCGTCGACGATCCTCTGAACCGCTTTCCCCTGGTGGTCATCGTGGACGACAGCGATT
TTGCCGCCCGGACCCTCAATAATTTCCTCTGGGTTACCTTTACCCGCTCCAATCCTGCAGCGGATATCCACGGCATCGGC
GCCTCGGTCCGCTGCAAACACTGGGGGTGCGACGGCGCATTGGTCATCGATGCCCGCATCAAGCCGCACCATGCGCCGCC
CCTGGAGGATGTCCCCGAGATTGAACGACGGGTCGATGAGCTTGGTGCTCCCGGAGGTCCGTTGCACGGCATCATCTGA

Upstream 100 bases:

>100_bases
CACCGTTGACTTGAGCACTGGGCATAGTTAGAGTGCGGATGCATGCTTATCACCGACTGCCTGCATGGCTGAGCGGTCAA
TTGGGGAGGATCTGCGGGGC

Downstream 100 bases:

>100_bases
GCAGCGTTCGATGGCTGTTCATGGCGGGAGGTGTTTCGTGGCGCGATACCTCTGTATGGCGATTCTCTTTCTTCTGCTGG
GTCCATGGCGCTCGATGGCC

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 612; Mature: 611

Protein sequence:

>612_residues
MGYRNLQECVKELERTGQLIRIDVETDPYLEIGAIQRRVYHAEGPALLFTRAKGCRFPLLGNLFGTMDRTTFIFRDTLRV
IERLVALKINPTAFLRDPLGHLGIPRAALHLLPRHVSDGPILANHTTLDQLPSLVSWPRDGGPFVTLPQVYSESPSRPGF
RFSNLGMYRVQLSGNEYAPNQEVGIHYQIHRGIGVHHAEAIARGEPLKVSVFVGGAPSMAVAAVMPLPEGLPELSFAGLL
AGRRIDMICRPDRLPLPAEADFVITGTIDPNRTLPEGPFGDHLGYYSLAHPFPVLTVENVYHRADAIWPYTTVGRPPQED
TTFGAFIHELTGALIPEVLPGVKAVHAVDAAGVHPLLLAVGSERYVPYEEERTPRELLTIASAILGNGQLSLAKYLFIAP
HEDEPPDIHDIDGFIRFTLERADWRRDLHFHTRTTIDTLDYSGTGLNEGSKVIVAAAGSPRRELPGELPVGLRLPDGFSA
PRVCFPGVLAVQGPAFPGYRDCVTPDMERFCAGISVDDPLNRFPLVVIVDDSDFAARTLNNFLWVTFTRSNPAADIHGIG
ASVRCKHWGCDGALVIDARIKPHHAPPLEDVPEIERRVDELGAPGGPLHGII

Sequences:

>Translated_612_residues
MGYRNLQECVKELERTGQLIRIDVETDPYLEIGAIQRRVYHAEGPALLFTRAKGCRFPLLGNLFGTMDRTTFIFRDTLRV
IERLVALKINPTAFLRDPLGHLGIPRAALHLLPRHVSDGPILANHTTLDQLPSLVSWPRDGGPFVTLPQVYSESPSRPGF
RFSNLGMYRVQLSGNEYAPNQEVGIHYQIHRGIGVHHAEAIARGEPLKVSVFVGGAPSMAVAAVMPLPEGLPELSFAGLL
AGRRIDMICRPDRLPLPAEADFVITGTIDPNRTLPEGPFGDHLGYYSLAHPFPVLTVENVYHRADAIWPYTTVGRPPQED
TTFGAFIHELTGALIPEVLPGVKAVHAVDAAGVHPLLLAVGSERYVPYEEERTPRELLTIASAILGNGQLSLAKYLFIAP
HEDEPPDIHDIDGFIRFTLERADWRRDLHFHTRTTIDTLDYSGTGLNEGSKVIVAAAGSPRRELPGELPVGLRLPDGFSA
PRVCFPGVLAVQGPAFPGYRDCVTPDMERFCAGISVDDPLNRFPLVVIVDDSDFAARTLNNFLWVTFTRSNPAADIHGIG
ASVRCKHWGCDGALVIDARIKPHHAPPLEDVPEIERRVDELGAPGGPLHGII
>Mature_611_residues
GYRNLQECVKELERTGQLIRIDVETDPYLEIGAIQRRVYHAEGPALLFTRAKGCRFPLLGNLFGTMDRTTFIFRDTLRVI
ERLVALKINPTAFLRDPLGHLGIPRAALHLLPRHVSDGPILANHTTLDQLPSLVSWPRDGGPFVTLPQVYSESPSRPGFR
FSNLGMYRVQLSGNEYAPNQEVGIHYQIHRGIGVHHAEAIARGEPLKVSVFVGGAPSMAVAAVMPLPEGLPELSFAGLLA
GRRIDMICRPDRLPLPAEADFVITGTIDPNRTLPEGPFGDHLGYYSLAHPFPVLTVENVYHRADAIWPYTTVGRPPQEDT
TFGAFIHELTGALIPEVLPGVKAVHAVDAAGVHPLLLAVGSERYVPYEEERTPRELLTIASAILGNGQLSLAKYLFIAPH
EDEPPDIHDIDGFIRFTLERADWRRDLHFHTRTTIDTLDYSGTGLNEGSKVIVAAAGSPRRELPGELPVGLRLPDGFSAP
RVCFPGVLAVQGPAFPGYRDCVTPDMERFCAGISVDDPLNRFPLVVIVDDSDFAARTLNNFLWVTFTRSNPAADIHGIGA
SVRCKHWGCDGALVIDARIKPHHAPPLEDVPEIERRVDELGAPGGPLHGII

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=481, Percent_Identity=30.1455301455301, Blast_Score=198, Evalue=7e-52,
Organism=Saccharomyces cerevisiae, GI6320748, Length=345, Percent_Identity=27.2463768115942, Blast_Score=92, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR022390
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 67176; Mature: 67044

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYRNLQECVKELERTGQLIRIDVETDPYLEIGAIQRRVYHAEGPALLFTRAKGCRFPLL
CCHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHEEECCCCEEEEEECCCCCCCHH
GNLFGTMDRTTFIFRDTLRVIERLVALKINPTAFLRDPLGHLGIPRAALHLLPRHVSDGP
HHHHHCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHCCHHHCCCCHHHHHHHHCCCCCCC
ILANHTTLDQLPSLVSWPRDGGPFVTLPQVYSESPSRPGFRFSNLGMYRVQLSGNEYAPN
EEECCCCHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCEEECCCCEEEEEECCCCCCCC
QEVGIHYQIHRGIGVHHAEAIARGEPLKVSVFVGGAPSMAVAAVMPLPEGLPELSFAGLL
CCCEEEEEEECCCCCHHHHHHHCCCCEEEEEEECCCCHHHHEEECCCCCCCCCHHHHHHH
AGRRIDMICRPDRLPLPAEADFVITGTIDPNRTLPEGPFGDHLGYYSLAHPFPVLTVENV
CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHH
YHRADAIWPYTTVGRPPQEDTTFGAFIHELTGALIPEVLPGVKAVHAVDAAGVHPLLLAV
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEE
GSERYVPYEEERTPRELLTIASAILGNGQLSLAKYLFIAPHEDEPPDIHDIDGFIRFTLE
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEE
RADWRRDLHFHTRTTIDTLDYSGTGLNEGSKVIVAAAGSPRRELPGELPVGLRLPDGFSA
HHHHHHCCEEEECCEEEECCCCCCCCCCCCEEEEEECCCCHHHCCCCCCCEEECCCCCCC
PRVCFPGVLAVQGPAFPGYRDCVTPDMERFCAGISVDDPLNRFPLVVIVDDSDFAARTLN
CCCCCCCEEEECCCCCCCCHHCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHC
NFLWVTFTRSNPAADIHGIGASVRCKHWGCDGALVIDARIKPHHAPPLEDVPEIERRVDE
CEEEEEEECCCCCCCEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
LGAPGGPLHGII
HCCCCCCCCCCC
>Mature Secondary Structure 
GYRNLQECVKELERTGQLIRIDVETDPYLEIGAIQRRVYHAEGPALLFTRAKGCRFPLL
CHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHEEECCCCEEEEEECCCCCCCHH
GNLFGTMDRTTFIFRDTLRVIERLVALKINPTAFLRDPLGHLGIPRAALHLLPRHVSDGP
HHHHHCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHCCHHHCCCCHHHHHHHHCCCCCCC
ILANHTTLDQLPSLVSWPRDGGPFVTLPQVYSESPSRPGFRFSNLGMYRVQLSGNEYAPN
EEECCCCHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCEEECCCCEEEEEECCCCCCCC
QEVGIHYQIHRGIGVHHAEAIARGEPLKVSVFVGGAPSMAVAAVMPLPEGLPELSFAGLL
CCCEEEEEEECCCCCHHHHHHHCCCCEEEEEEECCCCHHHHEEECCCCCCCCCHHHHHHH
AGRRIDMICRPDRLPLPAEADFVITGTIDPNRTLPEGPFGDHLGYYSLAHPFPVLTVENV
CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHH
YHRADAIWPYTTVGRPPQEDTTFGAFIHELTGALIPEVLPGVKAVHAVDAAGVHPLLLAV
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEE
GSERYVPYEEERTPRELLTIASAILGNGQLSLAKYLFIAPHEDEPPDIHDIDGFIRFTLE
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEE
RADWRRDLHFHTRTTIDTLDYSGTGLNEGSKVIVAAAGSPRRELPGELPVGLRLPDGFSA
HHHHHHCCEEEECCEEEECCCCCCCCCCCCEEEEEECCCCHHHCCCCCCCEEECCCCCCC
PRVCFPGVLAVQGPAFPGYRDCVTPDMERFCAGISVDDPLNRFPLVVIVDDSDFAARTLN
CCCCCCCEEEECCCCCCCCHHCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHC
NFLWVTFTRSNPAADIHGIGASVRCKHWGCDGALVIDARIKPHHAPPLEDVPEIERRVDE
CEEEEEEECCCCCCCEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
LGAPGGPLHGII
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9784136 [H]