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The map label for this gene is leuD [H]

Identifier: 39997000

GI number: 39997000

Start: 2080212

End: 2080739

Strand: Reverse

Name: leuD [H]

Synonym: GSU1902

Alternate gene names: 39997000

Gene position: 2080739-2080212 (Counterclockwise)

Preceding gene: 39997001

Following gene: 39996999

Centisome position: 54.55

GC content: 56.06

Gene sequence:

>528_bases
ATGAAACAGTTTGGCGGCCCCGTGCTCTTTCTCGACCGCTCTGATATCAATACCGACGAGATTATCCCGGCCAAGTATCT
GACCGAGATCACCAAGGAAGACCTCAAGCCCTATATCCTGGAAGATCTGAAACTGCCTGGTTTCGATCCCAAGGGGGAAA
AGACGAAGACTGCGCGTGTCGTTGTCTCCCGGGCCAATTTCGGGTGCGGCTCATCCCGTGAACACGCGCCGTGGGTGTTC
GAGGTGAACGGCATTACAGCTGTGATTGCCGAGTCCTTTGCCCGGATCTTCCGTCAGAACATGTTCAACTGCGGCATGGC
TGCCATTGAACTCTCCGCCGATACGATCGAGGGGCTGTTCACCTATGCCGGCTGCGCCGACGCGGCCATCTCCATTGATG
TTGCAGGACAAACGCTCACAATCTCGGGGGGGGGAACGTCGGAAACCCACTCCTTCGATATATCACCCTTTGACAAGGCT
CTTGTTCTCGCCGGTGGCTGGGTTGACTACGCCGACAGCAAGTATTGA

Upstream 100 bases:

>100_bases
CATGTCTCCGGCAACGAGTGCTGCAACCGCTATCGAGGGTAAGATAGCCGACCCCCGGAAGTATCTGTAGCTTCCATATT
CCCAGCAAGGAGACAGACCG

Downstream 100 bases:

>100_bases
ACATCGTTACATTGCATCGGATTGAAGCTTTTCGAGAGCCCGCCGCACGCGGGCTTTTTTTCTGTTCGCGCGGGTTGGGG
TCTTTTCTGTTGACTCCCCG

Product: 3-isopropylmalate dehydratase small subunit

Products: NA

Alternate protein names: Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKQFGGPVLFLDRSDINTDEIIPAKYLTEITKEDLKPYILEDLKLPGFDPKGEKTKTARVVVSRANFGCGSSREHAPWVF
EVNGITAVIAESFARIFRQNMFNCGMAAIELSADTIEGLFTYAGCADAAISIDVAGQTLTISGGGTSETHSFDISPFDKA
LVLAGGWVDYADSKY

Sequences:

>Translated_175_residues
MKQFGGPVLFLDRSDINTDEIIPAKYLTEITKEDLKPYILEDLKLPGFDPKGEKTKTARVVVSRANFGCGSSREHAPWVF
EVNGITAVIAESFARIFRQNMFNCGMAAIELSADTIEGLFTYAGCADAAISIDVAGQTLTISGGGTSETHSFDISPFDKA
LVLAGGWVDYADSKY
>Mature_175_residues
MKQFGGPVLFLDRSDINTDEIIPAKYLTEITKEDLKPYILEDLKLPGFDPKGEKTKTARVVVSRANFGCGSSREHAPWVF
EVNGITAVIAESFARIFRQNMFNCGMAAIELSADTIEGLFTYAGCADAAISIDVAGQTLTISGGGTSETHSFDISPFDKA
LVLAGGWVDYADSKY

Specific function: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate [H]

COG id: COG0066

COG function: function code E; 3-isopropylmalate dehydratase small subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the leuD family. LeuD type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786258, Length=171, Percent_Identity=32.7485380116959, Blast_Score=94, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6321429, Length=167, Percent_Identity=32.3353293413174, Blast_Score=85, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6320440, Length=115, Percent_Identity=33.9130434782609, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004431
- InterPro:   IPR012305
- InterPro:   IPR015937
- InterPro:   IPR015928
- InterPro:   IPR000573 [H]

Pfam domain/function: PF00694 Aconitase_C [H]

EC number: =4.2.1.33 [H]

Molecular weight: Translated: 18957; Mature: 18957

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFGGPVLFLDRSDINTDEIIPAKYLTEITKEDLKPYILEDLKLPGFDPKGEKTKTARV
CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCEEEE
VVSRANFGCGSSREHAPWVFEVNGITAVIAESFARIFRQNMFNCGMAAIELSADTIEGLF
EEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHH
TYAGCADAAISIDVAGQTLTISGGGTSETHSFDISPFDKALVLAGGWVDYADSKY
HHCCCCCCEEEEEECCCEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKQFGGPVLFLDRSDINTDEIIPAKYLTEITKEDLKPYILEDLKLPGFDPKGEKTKTARV
CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCEEEE
VVSRANFGCGSSREHAPWVFEVNGITAVIAESFARIFRQNMFNCGMAAIELSADTIEGLF
EEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHH
TYAGCADAAISIDVAGQTLTISGGGTSETHSFDISPFDKALVLAGGWVDYADSKY
HHCCCCCCEEEEEECCCEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA