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The map label for this gene is kdsD [H]

Identifier: 39996991

GI number: 39996991

Start: 2070412

End: 2071377

Strand: Reverse

Name: kdsD [H]

Synonym: GSU1893

Alternate gene names: 39996991

Gene position: 2071377-2070412 (Counterclockwise)

Preceding gene: 39996992

Following gene: 39996990

Centisome position: 54.31

GC content: 59.83

Gene sequence:

>966_bases
ATGATTCTCGAAGAAGCACGAAAAGTCATACGAATTGAAGCAGAAGCACTCACACGCCTTGCCGATACCATCGACGGCGA
GTTTGAAAAGGCGGTGCGCCTCATTCTCGGCACCCGTGGACGGGTTGTCGTTACCGGTATGGGAAAGTCAGGGCTTATCG
GCCAAAAAATAGCCTCAACCATGGCGTCCACCGGCACGCCGGCCCTGTTCCTCCACCCGGCGGAGGGGGTCCATGGCGAC
CTGGGGATGATCATGAAAGGGGATGTGGTCATCGCCATCTCCAACAGCGGCGAAACCGAAGAGGTGGTACGCATCCTCCC
GATCATCAAGCGGCTCGGCGCGACTCTCGTCTCCATGTCGGGCAACCCCTCATCCACGCTTGCCAAGGCCGGCGACGTGT
TTCTCGATATTTCGGTGACCGAGGAAGCCTGCCCCCTCGGCCTGGCTCCCACCGCATCCACCACTGCAACCCTTGCCATG
GGTGATGCCCTTGCAGTGGCTCTTCTCATCGAGCGCGGGTTCAGGCCCGAAGATTTTGCCCTGTTCCATCCGGGCGGCTC
CCTGGGGAAGAAACTCCTCCTCACGGTGGGGGACCTGATGCATTCGGGCGACGCCGTGCCGTTGGTGGGCTCCGCCACGC
CGATTCGTGATGCCCTGTTTGTCATTACGGCCAAAGGGCTAGGTATTACAGGTGTTTGCGCGGAAGACGGCGCACTGGTT
GGGGTGGTCACCGACGGCGATCTGCGGCGCTCTCTCGGTAAAGGCGTCGATATCCTGAATCAGCCCGCCGGAGAGATCAT
GACCCGCAATCCCAAGAGAATCAATCGCTCTGAGTTGGCAGCCAAGGCTCTCCAGGTAATGGAGTCCCACTCCATAACGT
CTCTGTTCGTTTTTGACGATACGGCCGACAACCGGCCGGTGGGAGTCATTCATCTCCATGACCTGTTGCGGGCGGGGTTG
GCATGA

Upstream 100 bases:

>100_bases
CGATGACCTGCCCGCACTGCTCAAGAAGCTGAAGGCAATAGACGCCATCGTAAAATAGATCCCGGGCCAGTCAGTGGCCG
GTTACTGAAACGGAAGCATA

Downstream 100 bases:

>100_bases
CCGCCGGGGAAAAGGAACTCATGGACGGACGCCTTGCCGGGATCAAGTTGCTGTTGCTCGATGTGGACGGCGTCATGACC
GATGGCCGGATCATCTTCGA

Product: carbohydrate isomerase KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MILEEARKVIRIEAEALTRLADTIDGEFEKAVRLILGTRGRVVVTGMGKSGLIGQKIASTMASTGTPALFLHPAEGVHGD
LGMIMKGDVVIAISNSGETEEVVRILPIIKRLGATLVSMSGNPSSTLAKAGDVFLDISVTEEACPLGLAPTASTTATLAM
GDALAVALLIERGFRPEDFALFHPGGSLGKKLLLTVGDLMHSGDAVPLVGSATPIRDALFVITAKGLGITGVCAEDGALV
GVVTDGDLRRSLGKGVDILNQPAGEIMTRNPKRINRSELAAKALQVMESHSITSLFVFDDTADNRPVGVIHLHDLLRAGL
A

Sequences:

>Translated_321_residues
MILEEARKVIRIEAEALTRLADTIDGEFEKAVRLILGTRGRVVVTGMGKSGLIGQKIASTMASTGTPALFLHPAEGVHGD
LGMIMKGDVVIAISNSGETEEVVRILPIIKRLGATLVSMSGNPSSTLAKAGDVFLDISVTEEACPLGLAPTASTTATLAM
GDALAVALLIERGFRPEDFALFHPGGSLGKKLLLTVGDLMHSGDAVPLVGSATPIRDALFVITAKGLGITGVCAEDGALV
GVVTDGDLRRSLGKGVDILNQPAGEIMTRNPKRINRSELAAKALQVMESHSITSLFVFDDTADNRPVGVIHLHDLLRAGL
A
>Mature_321_residues
MILEEARKVIRIEAEALTRLADTIDGEFEKAVRLILGTRGRVVVTGMGKSGLIGQKIASTMASTGTPALFLHPAEGVHGD
LGMIMKGDVVIAISNSGETEEVVRILPIIKRLGATLVSMSGNPSSTLAKAGDVFLDISVTEEACPLGLAPTASTTATLAM
GDALAVALLIERGFRPEDFALFHPGGSLGKKLLLTVGDLMHSGDAVPLVGSATPIRDALFVITAKGLGITGVCAEDGALV
GVVTDGDLRRSLGKGVDILNQPAGEIMTRNPKRINRSELAAKALQVMESHSITSLFVFDDTADNRPVGVIHLHDLLRAGL
A

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=317, Percent_Identity=51.4195583596215, Blast_Score=321, Evalue=4e-89,
Organism=Escherichia coli, GI87082151, Length=319, Percent_Identity=43.5736677115987, Blast_Score=248, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 33468; Mature: 33468

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILEEARKVIRIEAEALTRLADTIDGEFEKAVRLILGTRGRVVVTGMGKSGLIGQKIAST
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
MASTGTPALFLHPAEGVHGDLGMIMKGDVVIAISNSGETEEVVRILPIIKRLGATLVSMS
HHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEC
GNPSSTLAKAGDVFLDISVTEEACPLGLAPTASTTATLAMGDALAVALLIERGFRPEDFA
CCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCEE
LFHPGGSLGKKLLLTVGDLMHSGDAVPLVGSATPIRDALFVITAKGLGITGVCAEDGALV
EECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHEEEEEEECCCCEEEEECCCCCEE
GVVTDGDLRRSLGKGVDILNQPAGEIMTRNPKRINRSELAAKALQVMESHSITSLFVFDD
EEEECCHHHHHHHCCCCHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
TADNRPVGVIHLHDLLRAGLA
CCCCCCEEEEEHHHHHHHCCC
>Mature Secondary Structure
MILEEARKVIRIEAEALTRLADTIDGEFEKAVRLILGTRGRVVVTGMGKSGLIGQKIAST
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
MASTGTPALFLHPAEGVHGDLGMIMKGDVVIAISNSGETEEVVRILPIIKRLGATLVSMS
HHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEC
GNPSSTLAKAGDVFLDISVTEEACPLGLAPTASTTATLAMGDALAVALLIERGFRPEDFA
CCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCEE
LFHPGGSLGKKLLLTVGDLMHSGDAVPLVGSATPIRDALFVITAKGLGITGVCAEDGALV
EECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHEEEEEEECCCCEEEEECCCCCEE
GVVTDGDLRRSLGKGVDILNQPAGEIMTRNPKRINRSELAAKALQVMESHSITSLFVFDD
EEEECCHHHHHHHCCCCHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
TADNRPVGVIHLHDLLRAGLA
CCCCCCEEEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]