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The map label for this gene is yfiA [C]

Identifier: 39996984

GI number: 39996984

Start: 2064476

End: 2065021

Strand: Reverse

Name: yfiA [C]

Synonym: GSU1886

Alternate gene names: 39996984

Gene position: 2065021-2064476 (Counterclockwise)

Preceding gene: 39996985

Following gene: 39996983

Centisome position: 54.14

GC content: 53.85

Gene sequence:

>546_bases
ATGCAGATTACGACGACATTCAGACACATGGAGCAGAGCGAGGCCCTTAAGAGCTACGCCGCTGAAAAGCTGGAGAGGGT
AAAGAAATATATCGATGAGCCGATTACCGCTCAGGTATTTCTCACGGTGGAGAAGATCCGCCACATCGCCGAAGTGACCC
TTACCGCCAAGGGAATTACCATCAAGGCTGCGGAAGAAACCAATGACATGTATGCCGCACTGGATGCGGTGATCGACAAG
ATTGAGCGCCAGCTTCGCCGCTACAAAGAGCGGCTCAAAGAGCACAAGCCGTCCGCCGACGATCGGGCCCTGGAAATCCA
GAAGAGCGTTGTTACGGCCGAAAGCATCGAGCAACGGACCGAACCCGTCGTGATCAGGAGCAAGACCATCTCCATCAAGC
CTATGTCCGTGGAAGAGGCTGTGATGCAAATGGATCTTCTGCACAAGGATTTTCTCGTGTTCACCGACGCATCCACTGAG
GCTATCAATGTTGTCTATCGCAGGAAGGACGGCAACTACGGTCTCATCGAGCCCCAGCGCAAGTAG

Upstream 100 bases:

>100_bases
TGTTCCGGGTTGAAGGATCGTCATTTCGTGCTTTGATTACAGTGAAGACCACGAAAGACGGTTGGTCCCGGAACGCGGCC
ATTACAGCAAGGAGGAAGTC

Downstream 100 bases:

>100_bases
GCTGACCCTGTCGGCGGCCGGAGGAATTACGGAGATTTGGTAAGTCCGGCCATCGTGAGTCGATCATTACGGGGATTCAC
ATCATCCGGCGAGTTGACAG

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQVFLTVEKIRHIAEVTLTAKGITIKAAEETNDMYAALDAVIDK
IERQLRRYKERLKEHKPSADDRALEIQKSVVTAESIEQRTEPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTE
AINVVYRRKDGNYGLIEPQRK

Sequences:

>Translated_181_residues
MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQVFLTVEKIRHIAEVTLTAKGITIKAAEETNDMYAALDAVIDK
IERQLRRYKERLKEHKPSADDRALEIQKSVVTAESIEQRTEPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTE
AINVVYRRKDGNYGLIEPQRK
>Mature_181_residues
MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQVFLTVEKIRHIAEVTLTAKGITIKAAEETNDMYAALDAVIDK
IERQLRRYKERLKEHKPSADDRALEIQKSVVTAESIEQRTEPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTE
AINVVYRRKDGNYGLIEPQRK

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=40, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20852; Mature: 20852

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQVFLTVEKIRHIAEVTLTAKGIT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCEE
IKAAEETNDMYAALDAVIDKIERQLRRYKERLKEHKPSADDRALEIQKSVVTAESIEQRT
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
EPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTEAINVVYRRKDGNYGLIEPQR
CCEEEEECEEEECCCCHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEEECCCCCCCCCCC
K
C
>Mature Secondary Structure
MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQVFLTVEKIRHIAEVTLTAKGIT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCEE
IKAAEETNDMYAALDAVIDKIERQLRRYKERLKEHKPSADDRALEIQKSVVTAESIEQRT
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
EPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTEAINVVYRRKDGNYGLIEPQR
CCEEEEECEEEECCCCHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEEECCCCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA