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The map label for this gene is ywhC [H]

Identifier: 39996933

GI number: 39996933

Start: 1999994

End: 2000674

Strand: Reverse

Name: ywhC [H]

Synonym: GSU1834

Alternate gene names: 39996933

Gene position: 2000674-1999994 (Counterclockwise)

Preceding gene: 39996934

Following gene: 39996932

Centisome position: 52.45

GC content: 59.03

Gene sequence:

>681_bases
ATGGAAAACTTCTTTCTCAAGCTCTCCATCATGCTCGTGCCGGCCCTTATGGCAATCACCTGCCACGAAGTCTCCCACGG
CTTCATTGCCGATCGCCTTGGCGACCGGACGGCCCGCTTCATGGGCCGGCTCACGCTGAATCCTCTCAAGCATCTGGACC
TCTTCGGTACTCTCATGGTCTTCATTGTCGGCATCGGGTGGGCCAAGCCGGTTCCGGTCAATTTCGGCAACCTGCGTAAT
CCGAAGCGGGACATGGTCTGGGTTGCGGCCGCCGGGCCCATTACCAACTTCACGCTGGCCTTTCTGTCTGCCATGGCCAT
GCGCGGACTGGCCGCTGCAGGCAGCATGCTGCCGGATAGTTCGCCCCTTCAGATGGCCCTCGACCCGATCGTGCTGATGC
TTGCCTTTTCGGTCTACATCAATCTGCTCCTGGGCATCTTCAATCTGATTCCGGTGCCTCCCCTGGACGGCGGCCGCGTG
GCCGTGGGGCTTCTGCCCTACCGGCAGGCCGAGGCCTTGGCGCGGTTTGAGCCCTACGGCATGATCGTCATCATCCTGCT
GGTTTTTTTCACCAATATATTCGAGAAAGTCATCTCCCCGGTGGTGGATTTGGGCATCAGCATCCTCGCCGGGCCCCAAA
GCGGACTGGTGTACAATGTCACGCATTTTCTGATGAGATAA

Upstream 100 bases:

>100_bases
CGCCTTTCTTTTTTTGCATCGGCGGTTCAGGCTGCCTCGTTGACTTTCTGCCCCATATCTGTTAGAAATGACCGATTTTA
CGAGGTGAAAAGCCCCACAC

Downstream 100 bases:

>100_bases
CAGGTGCGCGGACCCGGTGGATGAAGCGATGGTCCACCGTTGTCCCGTGCCGGTAAGGAGCCTGTAATGAGCAACAAGCG
GATAGTAAGCGGCATGAGAC

Product: M50 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MENFFLKLSIMLVPALMAITCHEVSHGFIADRLGDRTARFMGRLTLNPLKHLDLFGTLMVFIVGIGWAKPVPVNFGNLRN
PKRDMVWVAAAGPITNFTLAFLSAMAMRGLAAAGSMLPDSSPLQMALDPIVLMLAFSVYINLLLGIFNLIPVPPLDGGRV
AVGLLPYRQAEALARFEPYGMIVIILLVFFTNIFEKVISPVVDLGISILAGPQSGLVYNVTHFLMR

Sequences:

>Translated_226_residues
MENFFLKLSIMLVPALMAITCHEVSHGFIADRLGDRTARFMGRLTLNPLKHLDLFGTLMVFIVGIGWAKPVPVNFGNLRN
PKRDMVWVAAAGPITNFTLAFLSAMAMRGLAAAGSMLPDSSPLQMALDPIVLMLAFSVYINLLLGIFNLIPVPPLDGGRV
AVGLLPYRQAEALARFEPYGMIVIILLVFFTNIFEKVISPVVDLGISILAGPQSGLVYNVTHFLMR
>Mature_226_residues
MENFFLKLSIMLVPALMAITCHEVSHGFIADRLGDRTARFMGRLTLNPLKHLDLFGTLMVFIVGIGWAKPVPVNFGNLRN
PKRDMVWVAAAGPITNFTLAFLSAMAMRGLAAAGSMLPDSSPLQMALDPIVLMLAFSVYINLLLGIFNLIPVPPLDGGRV
AVGLLPYRQAEALARFEPYGMIVIILLVFFTNIFEKVISPVVDLGISILAGPQSGLVYNVTHFLMR

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24713; Mature: 24713

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFFLKLSIMLVPALMAITCHEVSHGFIADRLGDRTARFMGRLTLNPLKHLDLFGTLMV
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FIVGIGWAKPVPVNFGNLRNPKRDMVWVAAAGPITNFTLAFLSAMAMRGLAAAGSMLPDS
HHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
SPLQMALDPIVLMLAFSVYINLLLGIFNLIPVPPLDGGRVAVGLLPYRQAEALARFEPYG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCCH
MIVIILLVFFTNIFEKVISPVVDLGISILAGPQSGLVYNVTHFLMR
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHC
>Mature Secondary Structure
MENFFLKLSIMLVPALMAITCHEVSHGFIADRLGDRTARFMGRLTLNPLKHLDLFGTLMV
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FIVGIGWAKPVPVNFGNLRNPKRDMVWVAAAGPITNFTLAFLSAMAMRGLAAAGSMLPDS
HHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
SPLQMALDPIVLMLAFSVYINLLLGIFNLIPVPPLDGGRVAVGLLPYRQAEALARFEPYG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCCH
MIVIILLVFFTNIFEKVISPVVDLGISILAGPQSGLVYNVTHFLMR
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]