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The map label for this gene is ihfB [H]

Identifier: 39996845

GI number: 39996845

Start: 1911413

End: 1911691

Strand: Reverse

Name: ihfB [H]

Synonym: GSU1746

Alternate gene names: 39996845

Gene position: 1911691-1911413 (Counterclockwise)

Preceding gene: 39996847

Following gene: 39996844

Centisome position: 50.12

GC content: 50.54

Gene sequence:

>279_bases
ATGAACAAATCCGAACTGATTGAGGCGTTGGCGGCGGAGAAGGGCCTTACCTACAAAAAGGCCGAAGAAGTCGTCAATAT
CGTATTCGATTCAATGAGCAGTGCGATGATCCGCAATGAGCGAATCGAGATTCGCGGTTTCGGGAGTTTTGTCGTCAAGG
ATTACAAGTCCTATACGGGGCGTAACCCCAAGACCGGCGAACCCATTGAGGTCAAACCCAAGAAACTTCCATTTTTCAAG
GTCGGCAAGGAGCTGAAGGAGCGCGTTGACGGCAAGTGA

Upstream 100 bases:

>100_bases
AAAGTTTCGTTCCCGCCCGCCGAAGAGATAGTAACGGATACTGTTCTCGCTTTCATGCGATGCAGATCGTAGTTTATTCA
CTTTATTGAGGAGGACGGGA

Downstream 100 bases:

>100_bases
TTGCAGCTTCTCCTTTTTGGCGAGCAGGTGATCATAACCTCTACTGGTCAGCGTTCCGGATGACACCTCTTAATGCAGAG
ACTTCGGGTAATTCTTACAA

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTGRNPKTGEPIEVKPKKLPFFK
VGKELKERVDGK

Sequences:

>Translated_92_residues
MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTGRNPKTGEPIEVKPKKLPFFK
VGKELKERVDGK
>Mature_92_residues
MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTGRNPKTGEPIEVKPKKLPFFK
VGKELKERVDGK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=35.5555555555556, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=35.5555555555556, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=31.4606741573034, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10441; Mature: 10441

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTG
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCC
RNPKTGEPIEVKPKKLPFFKVGKELKERVDGK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTG
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCC
RNPKTGEPIEVKPKKLPFFKVGKELKERVDGK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA